Home LiteratureArticle Details
PMID: 12414732 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Promoter proximal splice sites enhance transcription.

Genes & development ·Vol. 16 ·No. 21 ·2002-11-01 ·Pages 2792-9

Furger A, O'Sullivan JM, Binnie A, Lee BA, Proudfoot NJ

Abstract

Reconstruction of a gene with its introns removed results in reduced levels of cytoplasmic mRNA. This is partly explained by introns promoting the export of mRNA through coupling splicing to nuclear export processes. However, we show here that splicing signals can have a direct role in enhancing gene transcription. Removal of promoter proximal splice signals from a mammalian gene or the excision of introns from two different yeast genes results in a marked reduction in levels of nascent transcription, based on both nuclear run-on and direct image analysis. This further establishes that mRNA processing and transcription are tightly coupled mechanisms.

MeSH Terms
Genes, Fungal Genes, Viral HIV-1/genetics Promoter Regions, Genetic/genetics RNA Splice Sites/genetics RNA, Messenger/genetics Saccharomyces cerevisiae/genetics Transcription, Genetic
Chemicals
RNA Splice Sites RNA, Messenger
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Furger Andre
Sir William Dunn School of Pathology, University of Oxford, Oxford OX1 3RE, United Kingdom.
O'Sullivan Justin M
Binnie Alexandra
Lee Barbara A
Proudfoot Nick J
References (31)
31 references, click to expand
  1. Interruption of coding sequences by heterologous introns can enhance the functional expression of recombinant genes.
    Gene Ther. 2001 Apr;8(8):649-53 PMID: 11320412
  2. Multiple transcript cleavage precedes polymerase release in termination by RNA polymerase II.
    Cell. 2001 Jun 1;105(5):669-81 PMID: 11389836
  3. The retroviruses human immunodeficiency virus type 1 and Moloney murine leukemia virus adopt radically different strategies to regulate promoter-proximal polyadenylation.
    J Virol. 2001 Dec;75(23):11735-46 PMID: 11689654
  4. RNA ligands generated against complex nuclear targets indicate a role for U1 snRNP in co-ordinating transcription and RNA splicing.
    FEBS Lett. 2001 Dec 7;509(2):282-6 PMID: 11741604
  5. Stimulatory effect of splicing factors on transcriptional elongation.
    Nature. 2001 Dec 20-27;414(6866):929-33 PMID: 11780068
  6. Integrating mRNA processing with transcription.
    Cell. 2002 Feb 22;108(4):501-12 PMID: 11909521
  7. A conserved mRNA export machinery coupled to pre-mRNA splicing.
    Cell. 2002 Feb 22;108(4):523-31 PMID: 11909523
  8. U1 snRNA associates with TFIIH and regulates transcriptional initiation.
    Nat Struct Biol. 2002 Nov;9(11):800-5 PMID: 12389039
  9. Ty elements transpose through an RNA intermediate.
    Cell. 1985 Mar;40(3):491-500 PMID: 2982495
  10. Pseudogenes in yeast?
    Cell. 1987 Apr 10;49(1):5-6 PMID: 3549000
  11. Introns increase transcriptional efficiency in transgenic mice.
    Proc Natl Acad Sci U S A. 1988 Feb;85(3):836-40 PMID: 3422466
  12. In vitro polyadenylation is stimulated by the presence of an upstream intron.
    Genes Dev. 1990 Sep;4(9):1552-9 PMID: 1701407
  13. Heterologous introns can enhance expression of transgenes in mice.
    Proc Natl Acad Sci U S A. 1991 Jan 15;88(2):478-82 PMID: 1988947
  14. Poly(A) site selection in the HIV-1 provirus: inhibition of promoter-proximal polyadenylation by the downstream major splice donor site.
    Genes Dev. 1995 Dec 1;9(23):3008-25 PMID: 7498796
  15. The HIV-1 5' LTR poly(A) site is inactivated by U1 snRNP interaction with the downstream major splice donor site.
    EMBO J. 1997 Sep 15;16(18):5752-63 PMID: 9312033
  16. Intergenic transcription and transinduction of the human beta-globin locus.
    Genes Dev. 1997 Oct 1;11(19):2494-509 PMID: 9334315
  17. Coupling termination of transcription to messenger RNA maturation in yeast.
    Science. 1998 Apr 10;280(5361):298-301 PMID: 9535662
  18. Dissecting the regulatory circuitry of a eukaryotic genome.
    Cell. 1998 Nov 25;95(5):717-28 PMID: 9845373
  19. Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae.
    RNA. 1999 Feb;5(2):221-34 PMID: 10024174
  20. Terminal exon definition occurs cotranscriptionally and promotes termination of RNA polymerase II.
    Mol Cell. 1999 Mar;3(3):371-8 PMID: 10198639
  21. Phosphorylated RNA polymerase II stimulates pre-mRNA splicing.
    Genes Dev. 1999 May 15;13(10):1234-9 PMID: 10346811
  22. Genomic-scale quantitative analysis of yeast pre-mRNA splicing: implications for splice-site recognition.
    RNA. 1999 Sep;5(9):1135-7 PMID: 10496213
  23. A handful of intron-containing genes produces the lion's share of yeast mRNA.
    RNA. 1999 Sep;5(9):1138-9 PMID: 10496214
  24. Stem-loop 1 of the U1 snRNP plays a critical role in the suppression of HIV-1 polyadenylation.
    RNA. 2000 Feb;6(2):170-7 PMID: 10688356
  25. Lentivirus replication and regulation.
    Annu Rev Genet. 1999;33:133-70 PMID: 10690406
  26. The carboxyl terminus of vertebrate poly(A) polymerase interacts with U2AF 65 to couple 3'-end processing and splicing.
    Genes Dev. 2000 Feb 15;14(4):403-13 PMID: 10691733
  27. RNA polymerase II and the integration of nuclear events.
    Genes Dev. 2000 Jun 15;14(12):1415-29 PMID: 10859161
  28. Alternative pre-mRNA splicing: the logic of combinatorial control.
    Trends Biochem Sci. 2000 Aug;25(8):381-8 PMID: 10916158
  29. Alternative splicing: increasing diversity in the proteomic world.
    Trends Genet. 2001 Feb;17(2):100-7 PMID: 11173120
  30. Initial sequencing and analysis of the human genome.
    Nature. 2001 Feb 15;409(6822):860-921 PMID: 11237011
  31. Gene therapy: trials and tribulations.
    Nat Rev Genet. 2000 Nov;1(2):91-9 PMID: 11253666
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
2002-11-01
Pages
2792-9
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC187476
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com