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PMID: 12149447 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.

Rienstra CM, Tucker-Kellogg L, Jaroniec CP, Hohwy M, Reif B, McMahon MT, Tidor B, Lozano-Pérez T, Griffin RG

Abstract

The three-dimensional structure of the chemotactic peptide N-formyl-l-Met-l-Leu-l-Phe-OH was determined by using solid-state NMR (SSNMR). The set of SSNMR data consisted of 16 (13)C-(15)N distances and 18 torsion angle constraints (on 10 angles), recorded from uniformly (13)C,(15)N- and (15)N-labeled samples. The peptide's structure was calculated by means of simulated annealing and a newly developed protocol that ensures that all of conformational space, consistent with the structural constraints, is searched completely. The result is a high-quality structure of a molecule that has thus far not been amenable to single-crystal diffraction studies. The extensions of the SSNMR techniques and computational methods to larger systems appear promising.

MeSH Terms
N-Formylmethionine Leucyl-Phenylalanine/chemistry Nuclear Magnetic Resonance, Biomolecular/methods Peptides/chemistry Protein Structure, Tertiary
Chemicals
Peptides N-Formylmethionine Leucyl-Phenylalanine
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Rienstra Chad M
Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Tucker-Kellogg Lisa
Jaroniec Christopher P
Hohwy Morten
Reif Bernd
McMahon Michael T
Tidor Bruce
Lozano-Pérez Tomas
Griffin Robert G
References (22)
22 references, click to expand
  1. Partial NMR assignments for uniformly (13C, 15N)-enriched BPTI in the solid state.
    J Biomol NMR. 2000 Mar;16(3):209-19 PMID: 10805127
  2. Methods for sequential resonance assignment in solid, uniformly 13C, 15N labelled peptides: quantification and application to antamanide.
    J Biomol NMR. 2001 Jul;20(3):203-21 PMID: 11519745
  3. Three-dimensional structure determination of a uniformly labeled molecule by frequency-selective dipolar recoupling under magic-angle spinning.
    J Biomol NMR. 2000 Jun;17(2):111-23 PMID: 10921776
  4. Heteronuclear 2D-correlations in a uniformly [13C, 15N] labeled membrane-protein complex at ultra-high magnetic fields.
    J Biomol NMR. 2001 Mar;19(3):243-53 PMID: 11330811
  5. Frequency selective heteronuclear dipolar recoupling in rotating solids: accurate (13)C-(15)N distance measurements in uniformly (13)C,(15)N-labeled peptides.
    J Am Chem Soc. 2001 Apr 18;123(15):3507-19 PMID: 11472123
  6. Backbone and side-chain 13C and 15N signal assignments of the alpha-spectrin SH3 domain by magic angle spinning solid-state NMR at 17.6 Tesla.
    Chembiochem. 2001 Apr 2;2(4):272-81 PMID: 11828455
  7. NMR determination of the torsion angle psi in alpha-helical peptides and proteins: the HCCN dipolar correlation experiment.
    J Magn Reson. 2002 Feb;154(2):317-24 PMID: 11846590
  8. The structure-activity relations of synthetic peptides as chemotactic factors and inducers of lysosomal secretion for neutrophils.
    J Exp Med. 1976 May 1;143(5):1154-69 PMID: 1262785
  9. Determination of three-dimensional structures of proteins from interproton distance data by hybrid distance geometry-dynamical simulated annealing calculations.
    FEBS Lett. 1988 Mar 14;229(2):317-24 PMID: 3345845
  10. Crystal structure, conformation, and potential energy calculations of the chemotactic peptide N-formyl-L-Met-L-Leu-L-Phe-OMe.
    Int J Pept Protein Res. 1989 Nov;34(5):409-15 PMID: 2613442
  11. Determination of membrane protein structure by rotational resonance NMR: bacteriorhodopsin.
    Science. 1991 Feb 15;251(4995):783-6 PMID: 1990439
  12. Rotational resonance NMR study of the active site structure in bacteriorhodopsin: conformation of the Schiff base linkage.
    Biochemistry. 1992 Sep 1;31(34):7931-8 PMID: 1510979
  13. Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.
    Proc Natl Acad Sci U S A. 1995 Sep 26;92(20):9279-83 PMID: 7568117
  14. Structural model for the beta-amyloid fibril based on interstrand alignment of an antiparallel-sheet comprising a C-terminal peptide.
    Nat Struct Biol. 1995 Nov;2(11):990-8 PMID: 7583673
  15. Intersubunit communication in tryptophan synthase by carbon-13 and fluorine-19 REDOR NMR.
    Biochemistry. 1996 Mar 12;35(10):3328-34 PMID: 8605170
  16. Ligand geometry of the ternary complex of 5-enolpyruvylshikimate-3-phosphate synthase from rotational-echo double-resonance NMR.
    Biochemistry. 1996 Apr 30;35(17):5395-403 PMID: 8611529
  17. Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium.
    Science. 1997 Nov 7;278(5340):1111-4 PMID: 9353189
  18. Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.
    Proc Natl Acad Sci U S A. 1997 Nov 11;94(23):12366-71 PMID: 9356455
  19. Dipolar recoupling in MAS spectra of biological solids.
    Nat Struct Biol. 1998 Jul;5 Suppl:508-12 PMID: 9665180
  20. Crystallography & NMR system: A new software suite for macromolecular structure determination.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PMID: 9757107
  21. A peptide that inhibits hydroxyapatite growth is in an extended conformation on the crystal surface.
    Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12083-7 PMID: 9770443
  22. NH-NH vector correlation in peptides by solid-state NMR.
    J Magn Reson. 2000 Jul;145(1):132-41 PMID: 10873504
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2002-08-06
Epub
2002-00-29
Pages
10260-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC124901
Subset
IM
Grants
NIGMS NIH HHS · F32 GM020818 · United States
NIA NIH HHS · AG-14366 · United States
NIGMS NIH HHS · F32 GM020134 · United States
NIGMS NIH HHS · GM-20818 · United States
NIGMS NIH HHS · GM-23403 · United States
NCRR NIH HHS · RR-00995 · United States
NIGMS NIH HHS · R01 GM020818 · United States
NIGMS NIH HHS · GM-20134 · United States
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