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PMID: 12136002 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Evidence that selected amplification of a bacterial lac frameshift allele stimulates Lac(+) reversion (adaptive mutation) with or without general hypermutability.

Genetics ·Vol. 161 ·No. 3 ·2002-07-00 ·Pages 945-56

Slechta ES, Liu J, Andersson DI, Roth JR

Abstract

In the genetic system of Cairns and Foster, a nongrowing population of an E. coli lac frameshift mutant appears to specifically accumulate Lac(+) revertants when starved on medium including lactose (adaptive mutation). This behavior has been attributed to stress-induced general mutagenesis in a subpopulation of starved cells (the hypermutable state model). We have suggested that, on the contrary, stress has no direct effect on mutability but favors only growth of cells that amplify their leaky mutant lac region (the amplification mutagenesis model). Selection enhances reversion primarily by increasing the mutant lac copy number within each developing clone on the selection plate. The observed general mutagenesis is attributed to a side effect of growth with an amplification-induction of SOS by DNA fragments released from a tandem array of lac copies. Here we show that the S. enterica version of the Cairns system shows SOS-dependent general mutagenesis and behaves in every way like the original E. coli system. In both systems, lac revertants are mutagenized during selection. Eliminating the 35-fold increase in mutation rate reduces revertant number only 2- to 4-fold. This discrepancy is due to continued growth of amplification cells until some clones manage to revert without mutagenesis solely by increasing their lac copy number. Reversion in the absence of mutagenesis is still dependent on RecA function, as expected if it depends on lac amplification (a recombination-dependent process). These observations support the amplification mutagenesis model.

MeSH Terms
Bacterial Proteins/genetics Escherichia coli/genetics,growth & development Frameshift Mutation Gene Amplification Genotype Lac Operon/genetics Lactose/metabolism Serine Endopeptidases/genetics Time Factors
Chemicals
Bacterial Proteins LexA protein, Bacteria Serine Endopeptidases Lactose
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Slechta E Susan
Department of Biology, University of Utah, Salt Lake City, UT 84112, USA.
Liu Jing
Andersson Dan I
Roth John R
References (41)
41 references, click to expand
  1. Directed mutation: between unicorns and goats.
    J Bacteriol. 1992 Mar;174(6):1711-6 PMID: 1548222
  2. Adaptive amplification: an inducible chromosomal instability mechanism.
    Cell. 2000 Nov 22;103(5):723-31 PMID: 11114329
  3. The origin of mutants.
    Nature. 1988 Sep 8;335(6186):142-5 PMID: 3045565
  4. Amplification-mutagenesis: evidence that "directed" adaptive mutation and general hypermutability result from growth with a selected gene amplification.
    Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):2164-9 PMID: 11830643
  5. Stationary-phase mutation in the bacterial chromosome: recombination protein and DNA polymerase IV dependence.
    Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8334-41 PMID: 11459972
  6. Adaptive reversion of an episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation.
    Proc Natl Acad Sci U S A. 1995 Jun 6;92(12):5487-90 PMID: 7777535
  7. Transposon stability and a role for conjugational transfer in adaptive mutability.
    Proc Natl Acad Sci U S A. 2000 Jun 20;97(13):7393-8 PMID: 10840058
  8. Opposing roles of the holliday junction processing systems of Escherichia coli in recombination-dependent adaptive mutation.
    Genetics. 1996 Mar;142(3):681-91 PMID: 8849879
  9. Selection-induced mutations.
    Curr Opin Genet Dev. 1992 Dec;2(6):943-6 PMID: 1477539
  10. Are adaptive mutations due to a decline in mismatch repair? The evidence is lacking.
    Mutat Res. 1999 Mar;436(2):179-84 PMID: 10095139
  11. The effect of genomic position on reversion of a lac frameshift mutation (lacIZ33) during non-lethal selection (adaptive mutation).
    Mol Microbiol. 2002 May;44(4):1017-32 PMID: 12010495
  12. Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli.
    Mol Genet Genomics. 2001 Oct;266(2):207-15 PMID: 11683261
  13. Some features of the mutability of bacteria during nonlethal selection.
    Genetics. 2000 Jan;154(1):49-59 PMID: 10628968
  14. Increased episomal replication accounts for the high rate of adaptive mutation in recD mutants of Escherichia coli.
    Genetics. 1999 May;152(1):15-30 PMID: 10224241
  15. Conjugation is not required for adaptive reversion of an episomal frameshift mutation in Escherichia coli.
    J Bacteriol. 1995 Nov;177(22):6670-1 PMID: 7592449
  16. Nucleotide sequence of the lexA gene of Escherichia coli K-12.
    Nucleic Acids Res. 1981 Aug 25;9(16):4149-61 PMID: 6272195
  17. An efficient recombination system for chromosome engineering in Escherichia coli.
    Proc Natl Acad Sci U S A. 2000 May 23;97(11):5978-83 PMID: 10811905
  18. Mechanisms of directed mutation.
    Genetics. 1992 Aug;131(4):783-9 PMID: 1516815
  19. Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli.
    Genetics. 1996 Jan;142(1):25-37 PMID: 8770582
  20. A search for a general phenomenon of adaptive mutability.
    Genetics. 1996 Jun;143(2):645-59 PMID: 8725216
  21. Escherichia coli DNA polymerase IV mutator activity: genetic requirements and mutational specificity.
    J Bacteriol. 2000 Aug;182(16):4587-95 PMID: 10913093
  22. Adaptive mutation in Escherichia coli: a role for conjugation.
    Science. 1995 Apr 21;268(5209):418-20 PMID: 7716545
  23. Compounds which serve as the sole source of carbon or nitrogen for Salmonella typhimurium LT-2.
    J Bacteriol. 1969 Oct;100(1):215-9 PMID: 4898986
  24. Adaptive mutation: implications for evolution.
    Bioessays. 2000 Dec;22(12):1067-74 PMID: 11084622
  25. Mechanisms of mutation in nondividing cells. Insights from the study of adaptive mutation in Escherichia coli.
    Ann N Y Acad Sci. 1999 May 18;870:133-45 PMID: 10415479
  26. Isolation and characterization of an operator-constitutive mutation in the recA gene of E. coli K-12.
    Mol Gen Genet. 1982;187(1):4-11 PMID: 6761542
  27. Spontaneous point mutations that occur more often when advantageous than when neutral.
    Genetics. 1990 Sep;126(1):5-16 PMID: 2227388
  28. Mutations of Bacteria from Virus Sensitivity to Virus Resistance.
    Genetics. 1943 Nov;28(6):491-511 PMID: 17247100
  29. On the specificity of adaptive mutations.
    Genetics. 1997 Jan;145(1):39-44 PMID: 9017388
  30. Evolving responsively: adaptive mutation.
    Nat Rev Genet. 2001 Jul;2(7):504-15 PMID: 11433357
  31. Procedure for identifying nonsense mutations.
    J Bacteriol. 1968 Jul;96(1):215-20 PMID: 4874308
  32. Genome-wide hypermutation in a subpopulation of stationary-phase cells underlies recombination-dependent adaptive mutation.
    EMBO J. 1997 Jun 2;16(11):3303-11 PMID: 9214645
  33. Population dynamics of a Lac- strain of Escherichia coli during selection for lactose utilization.
    Genetics. 1994 Oct;138(2):253-61 PMID: 7828809
  34. Lambda red-dependent growth and recombination of phage P22.
    Virology. 1984 Apr 15;134(1):161-7 PMID: 6231768
  35. Replica plating and indirect selection of bacterial mutants.
    J Bacteriol. 1952 Mar;63(3):399-406 PMID: 14927572
  36. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.
    Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6640-5 PMID: 10829079
  37. Mismatch repair protein MutL becomes limiting during stationary-phase mutation.
    Genes Dev. 1997 Sep 15;11(18):2426-37 PMID: 9308969
  38. Mechanisms of stationary phase mutation: a decade of adaptive mutation.
    Annu Rev Genet. 1999;33:57-88 PMID: 10690404
  39. SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification.
    Mol Cell. 2001 Mar;7(3):571-9 PMID: 11463382
  40. Genetic rearrangements and gene amplification in Escherichia coli: DNA sequences at the junctures of amplified gene fusions.
    Genes Dev. 1987 May;1(3):227-37 PMID: 3315849
  41. Evidence that F plasmid transfer replication underlies apparent adaptive mutation.
    Science. 1995 Apr 21;268(5209):421-3 PMID: 7716546
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
2002-07-00
Pages
945-56
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1462195
Subset
IM
Grants
NIGMS NIH HHS · GM 27068 · United States
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