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PMID: 12016460 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Do neighboring lakes share common taxa of bacterioplankton? Comparison of 16S rDNA fingerprints and sequences from three geographic regions.

Microbial ecology ·Vol. 44 ·No. 1 ·2002-07-00 ·Pages 1-9

Lindström ES, Leskinen E

Abstract

Bacterioplankton community composition was studied in 12 lakes in three different geographic regions in Scandinavia using denaturing gradient gel electrophoresis (DGGE) and sequencing of 16S rDNA. Area-specific abundant taxa were found in the lakes in two of the regions. In the region of Uppland the lakes had an alpha-proteobacterium, belonging to the subgroup Alpha V in common. The Alpha V bacteria appeared to be favored by neutral or higher pH values. The lakes in Lappland were found to harbor Actinobacteria, which appeared to be favored in bog lakes. No abundant taxon was found to be in common for the lakes in Svalbard, the third region studied.

MeSH Terms
Actinobacteria/classification,genetics Alphaproteobacteria/classification,genetics Animals DNA Fingerprinting Ecosystem Electrophoresis Fresh Water/microbiology Genes, Bacterial/genetics Genes, rRNA/genetics Hydrogen-Ion Concentration Molecular Sequence Data Phylogeny RNA, Ribosomal, 16S/genetics Scandinavian and Nordic Countries
Chemicals
RNA, Ribosomal, 16S
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Lindström E S
Department of Limnology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 20, SE-752 36 Uppsala, Sweden. Eva.Lindstrom@ebc.uu.se
Leskinen E
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Article Info
Journal
Microbial ecology
Abbr.
Microb Ecol
ISSN
0095-3628
DOI
10.1007/s00248-002-0007-6
Email
eva.lindstrom@ebc.uu.se
Published
2002-07-00
Epub
2002-00-07
Pages
1-9
Language
English
Region
United States
NLM ID
7500663
Subset
IM
External Links
PubMed source DOI: 10.1007/s00248-002-0007-6 View journal details
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