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PMID: 11818335 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Genome-wide analysis of mRNAs targeted to yeast mitochondria.

EMBO reports ·Vol. 3 ·No. 2 ·2002-02-00 ·Pages 159-64

Marc P, Margeot A, Devaux F, Blugeon C, Corral-Debrinski M, Jacq C

Abstract

It is agreed that nuclear-encoded mitochondrial proteins are post-translationally targeted to mitochondria, even if, in some cases, a co-translational phase can assist the import of precursor proteins. We used yeast DNA microarrays to analyse the mRNA populations associated with free and mitochondrion-bound polysomes. As expected, many mRNAs, known to encode mitochondrial proteins, are localized to free cytoplasmic polysomes, but many are localized to mitochondrion-bound polysomes. Furthermore, the 3'-UTR of six randomly chosen mitochondrion-bound mRNAs contains sufficient information to target, in vivo, non-translatable RNA to the vicinity of mitochondria. Interestingly, genes producing mRNAs that are targeted to mitochondria are mainly of ancient bacterial origin, whereas those producing mRNAs that are translated in the cytoplasm are mainly of eukaryotic origin. These observations, which support the recent hypotheses concerning the dual origin of the mitochondrial proteome, provide new insights into the biogenesis of mitochondria.

MeSH Terms
DNA, Mitochondrial/genetics Genome, Fungal Oligonucleotide Array Sequence Analysis RNA, Messenger/genetics Saccharomyces cerevisiae/genetics,physiology
Chemicals
DNA, Mitochondrial RNA, Messenger
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Marc Philippe
Laboratoire de Génétique Moléculaire (UMR CNRS 8541), Ecole Normale Supérieure, 46 rue d'Ulm, F-75005 Paris, France.
Margeot Antoine
Devaux Frederic
Blugeon Corinne
Corral-Debrinski Marisol
Jacq Claude
References (32)
32 references, click to expand
  1. Large-scale identification of secreted and membrane-associated gene products using DNA microarrays.
    Nat Genet. 2000 May;25(1):58-62 PMID: 10802657
  2. Nascent polypeptide-associated complex stimulates protein import into yeast mitochondria.
    Mol Biol Cell. 1999 Oct;10(10):3289-99 PMID: 10512867
  3. In yeast, the 3' untranslated region or the presequence of ATM1 is required for the exclusive localization of its mRNA to the vicinity of mitochondria.
    Mol Cell Biol. 2000 Nov;20(21):7881-92 PMID: 11027259
  4. The dual origin of the yeast mitochondrial proteome.
    Yeast. 2000 Sep 30;17(3):170-87 PMID: 11025528
  5. Localizing proteins in the cell from their phylogenetic profiles.
    Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12115-20 PMID: 11035803
  6. RAC, a stable ribosome-associated complex in yeast formed by the DnaK-DnaJ homologs Ssz1p and zuotin.
    Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3762-7 PMID: 11274393
  7. mRNA localization: message on the move.
    Nat Rev Mol Cell Biol. 2001 Apr;2(4):247-56 PMID: 11283722
  8. Versatility of the mitochondrial protein import machinery.
    Nat Rev Mol Cell Biol. 2001 May;2(5):339-49 PMID: 11331908
  9. An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor.
    EMBO Rep. 2001 Jun;2(6):493-8 PMID: 11415981
  10. The origin and early evolution of mitochondria.
    Genome Biol. 2001;2(6):REVIEWS1018 PMID: 11423013
  11. Yeast COQ4 encodes a mitochondrial protein required for coenzyme Q synthesis.
    Arch Biochem Biophys. 2001 Aug 1;392(1):48-58 PMID: 11469793
  12. Presence of mitochondria-type ribosomes outside mitochondria in germ plasm of Drosophila embryos.
    Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):9133-8 PMID: 11470924
  13. Candida tropicalis Etr1p and Saccharomyces cerevisiae Ybr026p (Mrf1'p), 2-enoyl thioester reductases essential for mitochondrial respiratory competence.
    Mol Cell Biol. 2001 Sep;21(18):6243-53 PMID: 11509667
  14. Cytoplasmic type 80 S ribosomes associated with yeast mitochondria. II. Evidence for the association of cytoplasmic ribosomes with the outer mitochondrial membrane in situ.
    J Biol Chem. 1974 May 25;249(10):3297-303 PMID: 4598123
  15. Cytoplasmic type 80S ribosomes associated with yeast mitochondria. IV. Attachment of ribosomes to the outer membrane of isolated mitochondria.
    J Cell Biol. 1975 Apr;65(1):1-14 PMID: 1092698
  16. The products of mitochondria-bound cytoplasmic polysomes in yeast.
    J Biol Chem. 1980 Oct 25;255(20):9918-24 PMID: 6448841
  17. Import of proteins into mitochondria. Translatable mRNAs for imported mitochondrial proteins are present in free as well as mitochondria-bound cytoplasmic polysomes.
    J Biol Chem. 1982 Nov 10;257(21):13048-55 PMID: 6752146
  18. Coupling of cytosolic protein synthesis and mitochondrial protein import in yeast. Evidence for cotranslational import in vivo.
    J Biol Chem. 1993 Jan 25;268(3):1914-20 PMID: 8380582
  19. Co-translational protein import into mitochondria: an alternative view.
    Trends Biochem Sci. 1993 Oct;18(10):366-71 PMID: 8256283
  20. The single translation product of the FUM1 gene (fumarase) is processed in mitochondria before being distributed between the cytosol and mitochondria in Saccharomyces cerevisiae.
    Mol Cell Biol. 1994 Jul;14(7):4770-8 PMID: 8007976
  21. A protein complex required for signal-sequence-specific sorting and translocation.
    Nature. 1994 Aug 11;370(6489):434-40 PMID: 8047162
  22. Common principles of protein translocation across membranes.
    Science. 1996 Mar 15;271(5255):1519-26 PMID: 8599107
  23. Mating type switching in yeast controlled by asymmetric localization of ASH1 mRNA.
    Science. 1997 Jul 18;277(5324):383-7 PMID: 9219698
  24. Protein import into mitochondria.
    Annu Rev Biochem. 1997;66:863-917 PMID: 9242927
  25. Actin-dependent localization of an RNA encoding a cell-fate determinant in yeast.
    Nature. 1997 Sep 4;389(6646):90-3 PMID: 9288973
  26. The yeast nascent polypeptide-associated complex initiates protein targeting to mitochondria in vivo.
    Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2296-301 PMID: 9482879
  27. Import into mitochondria, folding and retrograde movement of fumarase in yeast.
    J Biol Chem. 1998 Oct 2;273(40):25587-93 PMID: 9748223
  28. Localization of ASH1 mRNA particles in living yeast.
    Mol Cell. 1998 Oct;2(4):437-45 PMID: 9809065
  29. The Yeast Proteome Database (YPD): a model for the organization and presentation of genome-wide functional data.
    Nucleic Acids Res. 1999 Jan 1;27(1):69-73 PMID: 9847145
  30. Using green fluorescent protein fusion proteins to quantitate microtubule and spindle dynamics in budding yeast.
    Methods Cell Biol. 1999;61:369-83 PMID: 9891324
  31. Localization and anchoring of mRNA in budding yeast.
    Curr Biol. 1999 Jun 3;9(11):569-78 PMID: 10359695
  32. Targeting of proteins to mitochondria.
    FEBS Lett. 2000 Jun 30;476(1-2):22-6 PMID: 10878243
Article Info
Journal
EMBO reports
Abbr.
EMBO Rep
ISSN
1469-221X
Published
2002-02-00
Epub
2002-00-29
Pages
159-64
Language
English
Region
England
NLM ID
100963049
PMCID
PMC1083966
Subset
IM
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