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PMID: 11718897 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Molecular characterisation of mouse and human TSSC6: evidence that TSSC6 is a genuine member of the tetraspanin superfamily and is expressed specifically in haematopoietic organs.

Biochimica et biophysica acta ·Vol. 1522 ·No. 1 ·2001-11-11 ·Pages 31-41

Robb L, Tarrant J, Groom J, Ibrahim M, Li R, Borobakas B, Wright MD

Abstract

Previous analyses of the murine and human TSSC6 (also known as Phemx) proteins were not carried out using the full length sequence. Using 5'-RACE and cDNA library screening, we identified an additional 5' sequence for both the murine Tssc6 cDNA and its human homologue TSSC6. This novel sequence encodes a 5' exon encoding an in frame, upstream start codon, an N-terminal cytoplasmic domain and a transmembrane domain. The deduced, and now full length, murine and human TSSC6 proteins contained four hydrophobic regions together with other features characteristic of the tetraspanin superfamily. Computational analyses of the full length sequences show that TSSC6 is a genuine, albeit relatively divergent member of this superfamily. Using RNA from a number of mouse tissues, we identified seven splice variants of Tssc6. Splice variants of the human gene were also detected. Tssc6 expression was detected early in embryogenesis in primitive blood cells and was confined to haematopoietic organs in the adult mouse. Tssc6 expression was detected in many haematopoietic cell lines and was highest in cell lines of the erythroid lineage.

MeSH Terms
Alternative Splicing Amino Acid Sequence Animals Base Sequence Cell Line Cloning, Molecular Codon Exons Gene Expression Genes, Tumor Suppressor Hematopoietic Stem Cells/metabolism Humans Membrane Proteins Mice Molecular Sequence Data Proteins/chemistry,genetics,metabolism Sequence Alignment Tetraspanins
Chemicals
Codon Membrane Proteins Phemx protein, mouse Proteins TSPAN32 protein, human Tetraspanins
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Robb L
Walter and Eliza Hall Institute of Medical Research, Royal Melbourne Hospital, Vic, Autralia. robb@wehi.edu.au
Tarrant J
Groom J
Ibrahim M
Li R
Borobakas B
Wright M D
Article Info
Journal
Biochimica et biophysica acta
Abbr.
Biochim Biophys Acta
ISSN
0006-3002
Published
2001-11-11
Pages
31-41
Language
English
Region
Netherlands
NLM ID
0217513
Subset
IM
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