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PMID: 11707590 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Diversity of gene expression in adenocarcinoma of the lung.

Garber ME, Troyanskaya OG, Schluens K, Petersen S, Thaesler Z, Pacyna-Gengelbach M, van de Rijn M, Rosen GD, Perou CM, Whyte RI, Altman RB, Brown PO, Botstein D, Petersen I

Abstract

The global gene expression profiles for 67 human lung tumors representing 56 patients were examined by using 24,000-element cDNA microarrays. Subdivision of the tumors based on gene expression patterns faithfully recapitulated morphological classification of the tumors into squamous, large cell, small cell, and adenocarcinoma. The gene expression patterns made possible the subclassification of adenocarcinoma into subgroups that correlated with the degree of tumor differentiation as well as patient survival. Gene expression analysis thus promises to extend and refine standard pathologic analysis.

MeSH Terms
Adenocarcinoma/classification,genetics,mortality,pathology Carcinoma, Large Cell/classification,genetics Carcinoma, Small Cell/classification,genetics Carcinoma, Squamous Cell/classification,genetics Gene Expression Gene Expression Profiling Genetic Variation Humans Lung Neoplasms/classification,genetics,mortality,pathology Survival Rate/trends
Authors & Affiliations
14 authors, click to expand affiliations / ORCID
Garber M E
Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Troyanskaya O G
Schluens K
Petersen S
Thaesler Z
Pacyna-Gengelbach M
van de Rijn M
Rosen G D
Perou C M
Whyte R I
Altman R B
Brown P O
Botstein D
Petersen I
References (22)
22 references, click to expand
  1. Dickkopf genes are co-ordinately expressed in mesodermal lineages.
    Mech Dev. 1999 Sep;87(1-2):45-56 PMID: 10495270
  2. p63 is essential for regenerative proliferation in limb, craniofacial and epithelial development.
    Nature. 1999 Apr 22;398(6729):714-8 PMID: 10227294
  3. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.
    Science. 1999 Oct 15;286(5439):531-7 PMID: 10521349
  4. Napsin A, a member of the aspartic protease family, is abundantly expressed in normal lung and kidney tissue and is expressed in lung adenocarcinomas.
    FEBS Lett. 1999 Nov 26;462(1-2):129-34 PMID: 10580105
  5. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.
    Nature. 2000 Feb 3;403(6769):503-11 PMID: 10676951
  6. Thyroid transcription factor-1 is a marker of lung and thyroid carcinomas.
    Adv Anat Pathol. 2000 Mar;7(2):123-7 PMID: 10721419
  7. AIS is an oncogene amplified in squamous cell carcinoma.
    Proc Natl Acad Sci U S A. 2000 May 9;97(10):5462-7 PMID: 10805802
  8. Molecular portraits of human breast tumours.
    Nature. 2000 Aug 17;406(6797):747-52 PMID: 10963602
  9. Architectural transcription factor HMGI(Y) promotes tumor progression and mesenchymal transition of human epithelial cells.
    Mol Cell Biol. 2001 Jan;21(2):575-94 PMID: 11134344
  10. Gene-expression profiles in hereditary breast cancer.
    N Engl J Med. 2001 Feb 22;344(8):539-48 PMID: 11207349
  11. Wnt antagonism initiates cardiogenesis in Xenopus laevis.
    Genes Dev. 2001 Feb 1;15(3):304-15 PMID: 11159911
  12. Inhibition of Wnt activity induces heart formation from posterior mesoderm.
    Genes Dev. 2001 Feb 1;15(3):316-27 PMID: 11159912
  13. Immunoreactivity for thyroid transcription factor-1 in stage I non-small cell carcinomas of the lung.
    Am J Surg Pathol. 2001 Mar;25(3):363-72 PMID: 11224607
  14. Missing value estimation methods for DNA microarrays.
    Bioinformatics. 2001 Jun;17(6):520-5 PMID: 11395428
  15. Neuroendocrine secretory protein 7B2: structure, expression and functions.
    Biochem J. 2001 Jul 15;357(Pt 2):329-42 PMID: 11439082
  16. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications.
    Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10869-74 PMID: 11553815
  17. Activation of an inducible c-FosER fusion protein causes loss of epithelial polarity and triggers epithelial-fibroblastoid cell conversion.
    Cell. 1992 Dec 24;71(7):1103-16 PMID: 1473147
  18. Epithelial transformation of metanephric mesenchyme in the developing kidney regulated by Wnt-4.
    Nature. 1994 Dec 15;372(6507):679-83 PMID: 7990960
  19. Dickkopf-1 is a member of a new family of secreted proteins and functions in head induction.
    Nature. 1998 Jan 22;391(6665):357-62 PMID: 9450748
  20. Fra-1 induces morphological transformation and increases in vitro invasiveness and motility of epithelioid adenocarcinoma cells.
    Mol Cell Biol. 1998 Dec;18(12):7095-105 PMID: 9819396
  21. Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A. 1998 Dec 8;95(25):14863-8 PMID: 9843981
  22. p63 is a p53 homologue required for limb and epidermal morphogenesis.
    Nature. 1999 Apr 22;398(6729):708-13 PMID: 10227293
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2001-11-20
Epub
2001-00-13
Pages
13784-9
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC61119
Subset
IM
Grants
NCI NIH HHS · R01 CA077097 · United States
NCI NIH HHS · U01 CA085129 · United States
NCI NIH HHS · CA77097 · United States
NCI NIH HHS · CA85129 · United States
Corrections
ErratumIn
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