Home LiteratureArticle Details
PMID: 11239001 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Chromatin-bound PCNA complex formation triggered by DNA damage occurs independent of the ATM gene product in human cells.

Nucleic acids research ·Vol. 29 ·No. 6 ·2001-03-15 ·Pages 1341-51

Balajee AS, Geard CR

Abstract

Proliferating cell nuclear antigen (PCNA), a processivity factor for DNA polymerases delta and epsilon, is involved in DNA replication as well as in diverse DNA repair pathways. In quiescent cells, UV light-induced bulky DNA damage triggers the transition of PCNA from a soluble to an insoluble chromatin-bound form, which is intimately associated with the repair synthesis by polymerases delta and epsilon. In this study, we investigated the efficiency of PCNA complex formation in response to ionizing radiation-induced DNA strand breaks in normal and radiation-sensitive Ataxia telangiectasia (AT) cells by immunofluorescence and western blot techniques. Exposure of normal cells to gamma-rays rapidly triggered the formation of PCNA foci in a dose-dependent manner in the nuclei and the PCNA foci (40-45%) co-localized with sites of repair synthesis detected by bromodeoxyuridine labeling. The chromatin-bound PCNA gradually declined with increasing post-irradiation times and almost reached the level of unirradiated cells by 6 h. The PCNA foci formed after gamma-irradiation was resistant to high salt extraction and the chromatin association of PCNA was lost after DNase I digestion. Interestingly, two radiosensitive primary fibroblast cell lines, derived from AT patients harboring homozygous mutations in the ATM gene, displayed an efficient PCNA redistribution after gamma-irradiation. We also analyzed the PCNA complex induced by a radiomimetic agent, Bleomycin (BLM), which produces predominantly single- and double-strand DNA breaks. The efficiency and the time course of PCNA complex induced by BLM were identical in both normal and AT cells. Our study demonstrates for the first time that the ATM gene product is not required for PCNA complex assembly in response to DNA strand breaks. Additionally, we observed an increased interaction of PCNA with the Ku70 and Ku80 heterodimer after DNA damage, suggestive of a role for PCNA in the non-homologous end-joining repair pathway of DNA strand breaks.

MeSH Terms
Antigens, Nuclear Ataxia Telangiectasia Mutated Proteins Bleomycin/pharmacology Blotting, Western Bromodeoxyuridine/metabolism Cell Cycle Proteins Cell Nucleus/chemistry,metabolism Cells, Cultured Chromatin/metabolism DNA Damage DNA Helicases DNA Repair DNA-Binding Proteins/chemistry,metabolism Dimerization Fibroblasts/drug effects,metabolism,radiation effects Fluorescent Antibody Technique Gamma Rays Humans Interphase Kinetics Ku Autoantigen Nuclear Proteins/chemistry,metabolism Proliferating Cell Nuclear Antigen/chemistry,metabolism Protein Binding/drug effects,radiation effects Protein Serine-Threonine Kinases/metabolism Time Factors Tumor Suppressor Proteins
Chemicals
Antigens, Nuclear Cell Cycle Proteins Chromatin DNA-Binding Proteins Nuclear Proteins Proliferating Cell Nuclear Antigen Tumor Suppressor Proteins Bleomycin ATM protein, human Ataxia Telangiectasia Mutated Proteins Protein Serine-Threonine Kinases DNA Helicases XRCC5 protein, human Xrcc6 protein, human Ku Autoantigen Bromodeoxyuridine
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Balajee A S
Department of Radiation Oncology, Center for Radiological Research, College of Physicians and Surgeons, Columbia University, VC-11, Room 243, 630 West, 168th Street, New York, NY 10032, USA. ab836@columbia.edu
Geard C R
References (55)
55 references, click to expand
  1. Oxidative damage-induced PCNA complex formation is efficient in xeroderma pigmentosum group A but reduced in Cockayne syndrome group B cells.
    Nucleic Acids Res. 1999 Nov 15;27(22):4476-82 PMID: 10536158
  2. Reconstitution of proliferating cell nuclear antigen-dependent repair of apurinic/apyrimidinic sites with purified human proteins.
    J Biol Chem. 1999 Nov 19;274(47):33703-8 PMID: 10559261
  3. PCNA binding proteins.
    Front Biosci. 1999 Dec 1;4:D849-58 PMID: 10577396
  4. Underestimation of the small residual damage when measuring DNA double-strand breaks (DSB): is the repair of radiation-induced DSB complete?
    Int J Radiat Biol. 1999 Dec;75(12):1589-95 PMID: 10622265
  5. A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damage.
    Mol Cell Biol. 2000 Feb;20(4):1206-18 PMID: 10648606
  6. Nucleotide excision repair of DNA with recombinant human proteins: definition of the minimal set of factors, active forms of TFIIH, and modulation by CAK.
    Genes Dev. 2000 Feb 1;14(3):349-59 PMID: 10673506
  7. Requirement for PCNA and RPA in interstrand crosslink-induced DNA synthesis.
    Nucleic Acids Res. 2000 Mar 15;28(6):1424-7 PMID: 10684938
  8. Cyclin/PCNA is the auxiliary protein of DNA polymerase-delta.
    Nature. 1987 Apr 2-8;326(6112):515-7 PMID: 2882423
  9. Saccharomyces cerevisiae replication factor C. II. Formation and activity of complexes with the proliferating cell nuclear antigen and with DNA polymerases delta and epsilon.
    J Biol Chem. 1991 Nov 25;266(33):22698-706 PMID: 1682322
  10. Induction of proliferating cell nuclear antigen (PCNA) complex formation in quiescent fibroblasts from a xeroderma pigmentosum patient.
    J Cell Physiol. 1992 Feb;150(2):370-6 PMID: 1346402
  11. Purification of PCNA as a nucleotide excision repair protein.
    Nucleic Acids Res. 1992 Jul 11;20(13):2441-6 PMID: 1352873
  12. D type cyclins associate with multiple protein kinases and the DNA replication and repair factor PCNA.
    Cell. 1992 Oct 30;71(3):505-14 PMID: 1358458
  13. DNA repair synthesis during base excision repair in vitro is catalyzed by DNA polymerase epsilon and is influenced by DNA polymerases alpha and delta in Saccharomyces cerevisiae.
    Mol Cell Biol. 1993 Feb;13(2):1051-8 PMID: 8423775
  14. Proliferating cell nuclear antigen complex formation induced by ultraviolet irradiation in human quiescent fibroblasts as detected by immunostaining and flow cytometry.
    Exp Cell Res. 1993 Apr;205(2):320-5 PMID: 8097724
  15. Proliferating cell nuclear antigen and p21 are components of multiple cell cycle kinase complexes.
    Mol Biol Cell. 1993 Sep;4(9):897-906 PMID: 7903056
  16. Proliferating cell nuclear antigen (pol30) mutations suppress cdc44 mutations and identify potential regions of interaction between the two encoded proteins.
    Mol Cell Biol. 1994 Jul;14(7):4390-7 PMID: 7516465
  17. Cell cycle expression and p53 regulation of the cyclin-dependent kinase inhibitor p21.
    Oncogene. 1994 Aug;9(8):2261-8 PMID: 7913544
  18. Proliferating cell nuclear antigen-dependent abasic site repair in Xenopus laevis oocytes: an alternative pathway of base excision DNA repair.
    Mol Cell Biol. 1994 Sep;14(9):6187-97 PMID: 7915006
  19. Cdk-interacting protein 1 directly binds with proliferating cell nuclear antigen and inhibits DNA replication catalyzed by the DNA polymerase delta holoenzyme.
    Proc Natl Acad Sci U S A. 1994 Aug 30;91(18):8655-9 PMID: 7915843
  20. DNA polymerase delta is required for base excision repair of DNA methylation damage in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1994 Sep 13;91(19):9047-51 PMID: 8090767
  21. Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA.
    Cell. 1994 Dec 30;79(7):1233-43 PMID: 8001157
  22. Mammalian DNA nucleotide excision repair reconstituted with purified protein components.
    Cell. 1995 Mar 24;80(6):859-68 PMID: 7697716
  23. Nucleotide excision repair DNA synthesis by DNA polymerase epsilon in the presence of PCNA, RFC, and RPA.
    Biochemistry. 1995 Apr 18;34(15):5011-7 PMID: 7711023
  24. A single ataxia telangiectasia gene with a product similar to PI-3 kinase.
    Science. 1995 Jun 23;268(5218):1749-53 PMID: 7792600
  25. Mechanism of inhibition of proliferating cell nuclear antigen-dependent DNA synthesis by the cyclin-dependent kinase inhibitor p21.
    Biochemistry. 1995 Jul 11;34(27):8869-75 PMID: 7612628
  26. A mutational analysis of the yeast proliferating cell nuclear antigen indicates distinct roles in DNA replication and DNA repair.
    Mol Cell Biol. 1995 Aug;15(8):4420-9 PMID: 7623835
  27. Lagging strand DNA synthesis at the eukaryotic replication fork involves binding and stimulation of FEN-1 by proliferating cell nuclear antigen.
    J Biol Chem. 1995 Sep 22;270(38):22109-12 PMID: 7673186
  28. Detection of nucleotide excision repair incisions in human fibroblasts by immunostaining for PCNA.
    Exp Cell Res. 1995 Dec;221(2):326-32 PMID: 7493631
  29. Tyrosine 114 is essential for the trimeric structure and the functional activities of human proliferating cell nuclear antigen.
    EMBO J. 1995 Nov 15;14(22):5745-51 PMID: 8521831
  30. Characterization of X-ray-induced immunostaining of proliferating cell nuclear antigen in human diploid fibroblasts.
    Radiat Res. 1996 Jan;145(1):75-80 PMID: 8532840
  31. Activation of the ATM kinase by ionizing radiation and phosphorylation of p53.
    Science. 1998 Sep 11;281(5383):1677-9 PMID: 9733515
  32. Mammalian base excision repair by DNA polymerases delta and epsilon.
    Oncogene. 1998 Aug 20;17(7):835-43 PMID: 9780000
  33. Repair of radiation-induced DNA double-strand breaks in human fibroblasts is consistent with a continuous spectrum of repair probability.
    Int J Radiat Biol. 1998 Nov;74(5):551-60 PMID: 9848273
  34. p53-mediated regulation of proliferating cell nuclear antigen expression in cells exposed to ionizing radiation.
    Mol Cell Biol. 1999 Jan;19(1):12-20 PMID: 9858527
  35. Efficient PCNA complex formation is dependent upon both transcription coupled repair and genome overall repair.
    Mutat Res. 1998 Dec 14;409(3):135-46 PMID: 9875289
  36. Induced repair of DNA double-strand breaks at the G1/S-phase border.
    Radiat Res. 1999 Mar;151(3):257-62 PMID: 10073662
  37. Radiation-induced assembly of Rad51 and Rad52 recombination complex requires ATM and c-Abl.
    J Biol Chem. 1999 Apr 30;274(18):12748-52 PMID: 10212258
  38. Single cell gel electrophoresis: detection of DNA damage at different levels of sensitivity.
    Electrophoresis. 1999 Jul;20(10):2133-8 PMID: 10451126
  39. Proliferating cell nuclear antigen facilitates excision in long-patch base excision repair.
    J Biol Chem. 1999 Feb 12;274(7):4354-63 PMID: 9933638
  40. The complete sequence of the coding region of the ATM gene reveals similarity to cell cycle regulators in different species.
    Hum Mol Genet. 1995 Nov;4(11):2025-32 PMID: 8589678
  41. Biochemical characterization of mouse brain necdin.
    Biochem J. 1996 Mar 15;314 ( Pt 3):895-901 PMID: 8615786
  42. Processing of branched DNA intermediates by a complex of human FEN-1 and PCNA.
    Nucleic Acids Res. 1996 Jun 1;24(11):2036-43 PMID: 8668533
  43. Roles of XPG and XPF/ERCC1 endonucleases in UV-induced immunostaining of PCNA in fibroblasts.
    Exp Cell Res. 1996 Jul 10;226(1):126-32 PMID: 8660947
  44. Requirement for PCNA in DNA mismatch repair at a step preceding DNA resynthesis.
    Cell. 1996 Oct 4;87(1):65-73 PMID: 8858149
  45. In vitro rejoining of double strand breaks induced in cellular DNA by bleomycin and restriction endonucleases.
    Int J Radiat Biol. 1997 Apr;71(4):365-75 PMID: 9154140
  46. Hypersensitivity of ataxia telangiectasia fibroblasts to ionizing radiation is associated with a repair deficiency of DNA double-strand breaks.
    Int J Radiat Biol. 1997 Sep;72(3):271-83 PMID: 9298107
  47. The DNA repair endonuclease XPG binds to proliferating cell nuclear antigen (PCNA) and shares sequence elements with the PCNA-binding regions of FEN-1 and cyclin-dependent kinase inhibitor p21.
    J Biol Chem. 1997 Sep 26;272(39):24522-9 PMID: 9305916
  48. hMre11 and hRad50 nuclear foci are induced during the normal cellular response to DNA double-strand breaks.
    Mol Cell Biol. 1997 Oct;17(10):6087-96 PMID: 9315668
  49. The roles of the eukaryotic DNA polymerases in DNA repair synthesis.
    Mutat Res. 1997 Sep;384(3):157-67 PMID: 9330612
  50. Mutations in yeast proliferating cell nuclear antigen define distinct sites for interaction with DNA polymerase delta and DNA polymerase epsilon.
    Mol Cell Biol. 1997 Nov;17(11):6367-78 PMID: 9343398
  51. Different DNA polymerases are involved in the short- and long-patch base excision repair in mammalian cells.
    Biochemistry. 1998 Mar 17;37(11):3575-80 PMID: 9530283
  52. Mutant PCNA alleles are associated with cdc phenotypes and sensitivity to DNA damage in fission yeast.
    Mol Gen Genet. 1998 Mar;257(5):505-18 PMID: 9563836
  53. Involvement of the proliferating cell nuclear antigen (PCNA) in DNA repair induced by alkylating agents and oxidative damage in human fibroblasts.
    Carcinogenesis. 1998 Apr;19(4):591-6 PMID: 9600342
  54. Fine structural analysis of DNA repair in mammalian cells.
    Mutat Res. 1998 Aug 3;404(1-2):3-11 PMID: 9729238
  55. Enhanced phosphorylation of p53 by ATM in response to DNA damage.
    Science. 1998 Sep 11;281(5383):1674-7 PMID: 9733514
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2001-03-15
Pages
1341-51
Language
English
Region
England
NLM ID
0411011
PMCID
PMC29758
Subset
IM
Grants
NCI NIH HHS · P01 CA049062 · United States
NCI NIH HHS · R01 CA075061 · United States
NCI NIH HHS · CA49062 · United States
NCI NIH HHS · CA75061 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com