Abstract
Whipple's disease is a systemic disorder associated with a cultivation-resistant, poorly characterized actinomycete, Tropheryma whippelii. We determined a nearly complete rRNA operon sequence of T. whippelii from specimens from 3 patients with Whipple's disease, as well as partial operon sequences from 43 patients. Variability was observed in the 16S-23S rRNA spacer sequences, leading to the description of five distinct sequence types. One specimen contained two spacer sequence types, raising the possibility of a double infection. Secondary structure models for the primary rRNA transcript and mature rRNAs revealed rare or unique features.
MeSH Terms
Actinomycetales/classification,genetics
Base Sequence
Genetic Variation
Humans
Molecular Sequence Data
Nucleic Acid Conformation
Operon
Phylogeny
RNA, Ribosomal/genetics
RNA, Ribosomal, 16S/genetics
RNA, Ribosomal, 23S/genetics
RNA, Ribosomal, 5S/genetics
Species Specificity
Whipple Disease/microbiology
Chemicals
RNA, Ribosomal
RNA, Ribosomal, 16S
RNA, Ribosomal, 23S
RNA, Ribosomal, 5S
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Maiwald M
Departments of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California 94305, USA.
von Herbay A
Lepp P W
Relman D A
References (30)
30 references, click to expand
-
Detection of three different types of 'Tropheryma whippelii' directly from clinical specimens by sequencing, single-strand conformation polymorphism (SSCP) analysis and type-specific PCR of their 16S-23S ribosomal intergenic spacer region.
Int J Syst Bacteriol. 1999 Oct;49 Pt 4:1701-6
PMID: 10555351
-
Homogeneity of 16S-23S ribosomal intergenic spacer regions of Tropheryma whippelii in Swiss patients with Whipple's disease.
J Clin Microbiol. 1999 Jan;37(1):152-6
PMID: 9854081
-
Cultivation of the bacillus of Whipple's disease.
N Engl J Med. 2000 Mar 2;342(9):620-5
PMID: 10699161
-
ARB: a software environment for sequence data.
Nucleic Acids Res. 2004;32(4):1363-71
PMID: 14985472
-
Ultrastructure of bacilli and the bacillary origin of the macrophagic inclusions in Whipple's disease.
J Gen Microbiol. 1985 May;131(5):1001-13
PMID: 2410546
-
Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens.
Gene. 1989 Jun 30;79(1):33-46
PMID: 2777089
-
16S ribosomal DNA amplification for phylogenetic study.
J Bacteriol. 1991 Jan;173(2):697-703
PMID: 1987160
-
Phylogeny of the Whipple's-disease-associated bacterium.
Lancet. 1991 Aug 24;338(8765):474-5
PMID: 1714530
-
Identification of the uncultured bacillus of Whipple's disease.
N Engl J Med. 1992 Jul 30;327(5):293-301
PMID: 1377787
-
Molecular epidemiology of Pseudomonas cepacia determined by polymerase chain reaction ribotyping.
J Clin Microbiol. 1992 Aug;30(8):2084-7
PMID: 1380010
-
Delineation of Borrelia burgdorferi sensu stricto, Borrelia garinii sp. nov., and group VS461 associated with Lyme borreliosis.
Int J Syst Bacteriol. 1992 Jul;42(3):378-83
PMID: 1380285
-
Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23S rRNA genes.
J Gen Microbiol. 1992 Jun;138(6):1167-75
PMID: 1326592
-
The nucleotide sequence of the promoter, 16S rRNA and spacer region of the ribosomal RNA operon of Mycobacterium tuberculosis and comparison with Mycobacterium leprae precursor rRNA.
J Gen Microbiol. 1992 Aug;138 Pt 8:1717-27
PMID: 1382114
-
[Whipple's disease associated with opportunistic infections].
Dtsch Med Wochenschr. 1993 Jun 11;118(23):854-60
PMID: 7685263
-
Restriction-site PCR: a direct method of unknown sequence retrieval adjacent to a known locus by using universal primers.
PCR Methods Appl. 1993 May;2(4):318-22
PMID: 8391890
-
Gene organization and primary structure of a ribosomal RNA gene cluster from Streptomyces griseus subsp. griseus.
Gene. 1993 Sep 30;132(1):21-31
PMID: 7691689
-
Nucleotide sequence and secondary structures of precursor 16S rRNA of slow-growing mycobacteria.
Microbiology. 1994 Jan;140 ( Pt 1):123-32
PMID: 7512868
-
Nucleotide sequences of the spacer-1, spacer-2 and trailer regions of the rrn operons and secondary structures of precursor 23S rRNAs and precursor 5S rRNAs of slow-growing mycobacteria.
Microbiology. 1994 Jul;140 ( Pt 7):1763-73
PMID: 7521248
-
The ribosomal RNA (rrn) operons of fast-growing mycobacteria: primary and secondary structures and their relation to rrn operons of pathogenic slow-growers.
Microbiology. 1994 Oct;140 ( Pt 10):2829-40
PMID: 8000546
-
New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region.
Microbiology. 1996 Jan;142 ( Pt 1):3-16
PMID: 8581168
-
Diagnostic application of a polymerase chain reaction assay for the Whipple's disease bacterium to intestinal biopsies.
Gastroenterology. 1996 Jun;110(6):1735-43
PMID: 8964398
-
Reassessment of the phylogenetic position of the bacterium associated with Whipple's disease and determination of the 16S-23S ribosomal intergenic spacer sequence.
Int J Syst Bacteriol. 1996 Oct;46(4):1078-82
PMID: 8863438
-
Diagnosis and monitoring of Whipple disease by polymerase chain reaction.
Ann Intern Med. 1997 Apr 1;126(7):520-7
PMID: 9092317
-
Whipple's disease: staging and monitoring by cytology and polymerase chain reaction analysis of cerebrospinal fluid.
Gastroenterology. 1997 Aug;113(2):434-41
PMID: 9247461
-
Deactivation of macrophages with interleukin-4 is the key to the isolation of Tropheryma whippelii.
J Infect Dis. 1997 Sep;176(3):672-7
PMID: 9291314
-
Environmental occurrence of the Whipple's disease bacterium (Tropheryma whippelii).
Appl Environ Microbiol. 1998 Feb;64(2):760-2
PMID: 9464419
-
Diagnosis of meningococcal meningitis by broad-range bacterial PCR with cerebrospinal fluid.
J Clin Microbiol. 1998 Aug;36(8):2205-9
PMID: 9665992
-
5S Ribosomal RNA Data Bank.
Nucleic Acids Res. 1999 Jan 1;27(1):158-60
PMID: 9847165
-
Database on the structure of large subunit ribosomal RNA.
Nucleic Acids Res. 1999 Jan 1;27(1):174-8
PMID: 9847172
-
Bacterial diversity within the human subgingival crevice.
Proc Natl Acad Sci U S A. 1999 Dec 7;96(25):14547-52
PMID: 10588742