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PMID: 10718609 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data.

Journal of biomolecular NMR ·Vol. 16 ·No. 1 ·2000-01-00 ·Pages 23-8

Dosset P, Hus JC, Blackledge M, Marion D

Abstract

A novel program has been developed for the interpretation of 15N relaxation rates in terms of macromolecular anisotropic rotational diffusion. The program is based on a highly efficient simulated annealing/minimization algorithm, designed specifically to search the parametric space described by the isotropic, axially symmetric and fully anisotropic rotational diffusion tensor models. The high efficiency of this algorithm allows extensive noise-based Monte Carlo error analysis. Relevant statistical tests are systematically applied to provide confidence limits for the proposed tensorial models. The program is illustrated here using the example of the cytochrome c' from Rhodobacter capsulatus, a four-helix bundle heme protein, for which data at three different field strengths were independently analysed and compared.

MeSH Terms
Algorithms Diffusion Models, Chemical Nitrogen/chemistry Nitrogen Isotopes Nuclear Magnetic Resonance, Biomolecular/methods Software
Chemicals
Nitrogen Isotopes Nitrogen
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Dosset P
Institut de Biologie Structurale--Jean-Pierre Ebel, C.N.R.S.-C.E.A., Grenoble, France.
Hus J C
Blackledge M
Marion D
References (10)
10 references, click to expand
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Article Info
Journal
Journal of biomolecular NMR
Abbr.
J Biomol NMR
ISSN
0925-2738
Published
2000-01-00
Pages
23-8
Language
English
Region
Netherlands
NLM ID
9110829
Subset
IM
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