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PMID: 10625424 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Solvent mobility and the protein 'glass' transition.

Nature structural biology ·Vol. 7 ·No. 1 ·2000-01-00 ·Pages 34-8

Vitkup D, Ringe D, Petsko GA, Karplus M

Abstract

Proteins and other biomolecules undergo a dynamic transition near 200 K to a glass-like solid state with small atomic fluctuations. This dynamic transition can inhibit biological function. To provide a deeper understanding of the relative importance of solvent mobility and the intrinsic protein energy surface in the transition, a novel molecular dynamics simulation procedure with the protein and solvent at different temperatures has been used. Solvent mobility is shown to be the dominant factor in determining the atomic fluctuations above 180 K, although intrinsic protein effects become important at lower temperatures. The simulations thus complement experimental studies by demonstrating the essential role of solvent in controlling functionally important protein fluctuations.

MeSH Terms
Computer Simulation Freezing Glass/chemistry Hot Temperature Kinetics Myoglobin/chemistry,metabolism Protein Structure, Secondary Solvents/chemistry,metabolism Temperature Thermodynamics Viscosity Water/metabolism
Chemicals
Myoglobin Solvents carboxymyoglobin Water
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Vitkup D
Rosenstiel Basic Medical Sciences Research Center, Brandeis University, Waltham, Massachusetts 02454-9110, USA.
Ringe D
Petsko G A
Karplus M
Article Info
Journal
Nature structural biology
Abbr.
Nat Struct Biol
ISSN
1072-8368
Published
2000-01-00
Pages
34-8
Language
English
Region
United States
NLM ID
9421566
Subset
IM
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