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PMID: 10592180 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

The EcoCyc and MetaCyc databases.

Nucleic acids research ·Vol. 28 ·No. 1 ·2000-01-01 ·Pages 56-9

Karp PD, Riley M, Saier M, Paulsen IT, Paley SM, Pellegrini-Toole A

Abstract

EcoCyc is an organism-specific Pathway/Genome Database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, and-a new addition-its transport proteins. MetaCyc is a new metabolic-pathway database that describes pathways and enzymes of many different organisms, with a microbial focus. Both databases are queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. EcoCyc and MetaCyc are available at http://ecocyc.PangeaSystems.com/ecocyc/

MeSH Terms

Database Management Systems Databases, Factual Escherichia coli/genetics Genome, Bacterial

Authors & Affiliations

6 authors, click to expand affiliations / ORCID

Karp P D

SRI International, 333 Ravenswood Avenue, EK223, Menlo Park, CA 94025, USA. pkarp@ai.sri.com

Riley M

Saier M

Paulsen I T

Paley S M

Pellegrini-Toole A

References (3)

3 references, click to expand

Integrated access to metabolic and genomic data.
J Comput Biol. 1996 Spring;3(1):191-212 PMID: 8697237
Integrated pathway-genome databases and their role in drug discovery.
Trends Biotechnol. 1999 Jul;17(7):275-81 PMID: 10370234
Microbial genome analyses: global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities.
J Mol Biol. 1998 Apr 3;277(3):573-92 PMID: 9533881

Article Info

Journal

Nucleic acids research

Abbr.

Nucleic Acids Res

ISSN

0305-1048

DOI

10.1093/nar/28.1.56

pkarp@ai.sri.com

Published

2000-01-01

Pages

56-9

Language

English

Region

England

NLM ID

0411011

PMCID

PMC102475

Subset

Grants

NCRR NIH HHS · R01 RR007861 · United States

NCRR NIH HHS · 1-RO1-RR07861-01 · United States

External Links

PubMed source DOI: 10.1093/nar/28.1.56 PMC Full Text View journal details

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The EcoCyc and MetaCyc databases.

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