Abstract
We report the isolation, sequence, and pattern of gene expression of members of the KNOTTED1 (KN1)-type class 1 homeobox gene family from rice. Phylogenetic analysis and mapping of the rice genome revealed that all of the rice homeobox genes that we have isolated have one or two direct homologs in maize. Of the homeobox genes that we tested, all exhibited expression in a restricted region of the embryo that defines the position at which the shoot apical meristem (SAM) would eventually develop, prior to visible organ formation. Several distinct spatial and temporal expression patterns were observed for the different genes in this region. After shoot formation, the expression patterns of these homeobox genes were variable in the region of the SAM. These results suggest that the rice KN1-type class 1 homeobox genes function cooperatively to establish the SAM before shoot formation and that after shoot formation, their functions differ.
MeSH Terms
Amino Acid Sequence
Base Sequence
Chromosome Mapping
Cloning, Molecular
DNA Primers/genetics
Gene Expression Regulation, Developmental
Gene Expression Regulation, Plant
Genes, Homeobox
Genes, Plant
Homeodomain Proteins/genetics
In Situ Hybridization
Molecular Sequence Data
Multigene Family
Oryza/embryology,genetics,growth & development
Phylogeny
Plant Proteins/genetics
Plant Shoots/growth & development
RNA, Messenger/genetics,metabolism
RNA, Plant/genetics,metabolism
Sequence Homology, Amino Acid
Chemicals
DNA Primers
Homeodomain Proteins
Kn1 protein, plant
Plant Proteins
RNA, Messenger
RNA, Plant
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Sentoku N
Nagoya University, BioScience Center, Chikusa, Nagoya 464-8601, Japan.
Sato Y
Kurata N
Ito Y
Kitano H
Matsuoka M
References (26)
26 references, click to expand
-
Loss-of-function mutations in the maize homeobox gene, knotted1, are defective in shoot meristem maintenance.
Development. 1997 Aug;124(16):3045-54
PMID: 9272946
-
Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
EMBO J. 1999 Feb 15;18(4):992-1002
PMID: 10022841
-
Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes.
Plant Cell. 1994 Dec;6(12):1877-87
PMID: 7866030
-
Expression of a rice homeobox gene causes altered morphology of transgenic plants.
Plant Cell. 1993 Sep;5(9):1039-48
PMID: 8104574
-
The orthodenticle gene is regulated by bicoid and torso and specifies Drosophila head development.
Nature. 1990 Aug 2;346(6283):485-8
PMID: 1974036
-
Borders of parasegments in Drosophila embryos are delimited by the fushi tarazu and even-skipped genes.
Nature. 1987 Jul 30-Aug 5;328(6129):440-2
PMID: 2886916
-
A novel homeobox protein which recognizes a TGT core and functionally interferes with a retinoid-responsive motif.
J Biol Chem. 1995 Dec 29;270(52):31178-88
PMID: 8537382
-
Homeobox genes and axial patterning.
Cell. 1992 Jan 24;68(2):283-302
PMID: 1346368
-
Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development.
Mol Gen Genet. 1993 Apr;238(1-2):106-19
PMID: 7683079
-
A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis.
Nature. 1996 Jan 4;379(6560):66-9
PMID: 8538741
-
Distinct classes of mitotic cyclins are differentially expressed in the soybean shoot apex during the cell cycle.
Plant Cell. 1995 Aug;7(8):1143-55
PMID: 7549477
-
Ectopic expression of a tobacco homeobox gene, NTH15, dramatically alters leaf morphology and hormone levels in transgenic tobacco.
Plant Cell Physiol. 1997 Aug;38(8):917-27
PMID: 9327591
-
Comparative linkage maps of the rice and maize genomes.
Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):7980-4
PMID: 8103599
-
Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms.
Genetics. 1988 Feb;118(2):353-63
PMID: 17246413
-
The making of a compound leaf: genetic manipulation of leaf architecture in tomato.
Cell. 1996 Mar 8;84(5):735-44
PMID: 8625411
-
Specification of limb development in the Drosophila embryo by positional cues from segmentation genes.
Nature. 1990 Jan 11;343(6254):173-7
PMID: 2296309
-
A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants.
Plant Cell. 1994 Dec;6(12):1859-76
PMID: 7866029
-
Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals.
Nucleic Acids Res. 1997 Nov 1;25(21):4173-80
PMID: 9336443
-
Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.
Genes Dev. 1995 Sep 15;9(18):2292-304
PMID: 7557382
-
Alternative RNA products from a rice homeobox gene.
Plant J. 1995 Jun;7(6):927-38
PMID: 7599652
-
Isolation and characterization of a rice homebox gene, OSH15.
Plant Mol Biol. 1998 Dec;38(6):983-98
PMID: 9869405
-
A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis.
Proc Natl Acad Sci U S A. 1996 Jul 23;93(15):8117-22
PMID: 8755613
-
Expression of novel homeobox genes in early embryogenesis in rice.
Biochim Biophys Acta. 1999 Mar 19;1444(3):445-50
PMID: 10095070
-
A gradient of bicoid protein in Drosophila embryos.
Cell. 1988 Jul 1;54(1):83-93
PMID: 3383244
-
Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis.
Plant Mol Biol. 1999 Jan;39(2):257-71
PMID: 10080693
-
Homology of the eyeless gene of Drosophila to the Small eye gene in mice and Aniridia in humans.
Science. 1994 Aug 5;265(5173):785-9
PMID: 7914031