TPRGene Detail-Gene Database-Genelibs

TPR (translocated promoter region, nuclear basket protein)

symbol

TPR

locus group

protein-coding gene

location

1q31.1

gene_family

alias symbol

alias name

None

entrez id

7175

ensembl gene id

ENSG00000047410

ucsc gene id

uc001grv.4

refseq accession

NM_003292

hgnc_id

HGNC:12017

approved reserved

1991-11-21

1q31.1

ChineseEnglish

The TPR (Translocated Promoter Region) gene encodes a structural protein integral to the assembly and function of the nuclear pore complex (NPC), belonging to a gene family characterized by long coiled-coil domains that facilitate protein-protein interactions and the formation of large multimeric complexes. Localized primarily within the nuclear basket region of the NPC, the TPR protein acts as a critical scaffold that maintains the structural stability of the pore, thereby regulating the bidirectional transport of macromolecules between the nucleus and cytoplasm. Beyond its structural role, TPR is involved in diverse cellular processes, including mRNA export, telomere maintenance, and mitotic regulation, where it interacts with key partners such as NUP153 for nucleocytoplasmic transport and MAD1 for spindle assembly checkpoint control. Additionally, TPR participates in DNA damage repair pathways, linking nuclear architecture to genomic integrity. Disruptions in TPR function, such as mutations that destabilize its coiled-coil structure, lead to defective NPC assembly, aberrant nuclear envelope morphology, mRNA retention, and increased genomic instability. The gene is implicated in several pathological conditions; for instance, TPR rearrangements have been associated with thyroid cancer and acute myeloid leukemia, while its loss accelerates cellular senescence. Conversely, altered expression levels disrupt nuclear transport homeostasis, potentially causing mislocalization of tumor suppressors like p53 or mispositioning of nuclear envelope proteins such as SUN1/2, which can induce progeroid phenotypes. Thus, TPR plays a central role in maintaining nuclear structure and signal transduction, and its dysregulation contributes to diseases ranging from cancer to premature aging syndromes through impairments in nucleocytoplasmic transport, telomere maintenance, and DNA repair.

OMIM entry for TPR Wikipedia entry for TPR

Nucleotide sequence of TPR:[NCBI]

Loading Gene Browser...

Protein Sequence

1MAAVLQQVLE RTELNKLPKS VQNKLEKFLA DQQSEIDGLK
41GRHEKFKVES EQQYFEIEKR LSHSQERLVN ETRECQSLRL
81
ELEKLNNQL KALTEKNKEL EIAQDRNIAI QSQFTRTKEE
121LEAEKRDLIR TNERLSQELE YLTEDVKRLN EKLKESNTTK
161G
ELQLKLDE LQASDVSVKY REKRLEQEKE LLHSQNTWLN
201TELKTKTDEL LALGREKGNE ILELKCNLEN KKEEVSRLEE
241QM
NGLKTSN EHLQKHVEDL LTKLKEAKEQ QASMEEKFHN
281ELNAHIKLSN LYKSAADDSE AKSNELTRAV EELHKLLKEA
321GEA
NKAIQD HLLEVEQSKD QMEKEMLEKI GRLEKELENA
361NDLLSATKRK GAILSEEELA AMSPTAAAVA KIVKPGMKLT
401ELYN
AYVET QDQLLLEKLE NKRINKYLDE IVKEVEAKAP
441ILKRQREEYE RAQKAVASLS VKLEQAMKEI QRLQEDTDKA
481NKQSS
VLER DNRRMEIQVK DLSQQIRVLL MELEEARGNH
521VIRDEEVSSA DISSSSEVIS QHLVSYRNIE ELQQQNQRLL
561VALREL
GET REREEQETTS SKITELQLKL ESALTELEQL
601RKSRQHQMQL VDSIVRQRDM YRILLSQTTG VAIPLHASSL
641DDVSLAS
TP KRPSTSQTVS TPAPVPVIES TEAIEAKAAL
681KQLQEIFENY KKEKAENEKI QNEQLEKLQE QVTDLRSQNT
721KISTQLDF
A SKRYEMLQDN VEGYRREITS LHERNQKLTA
761TTQKQEQIIN TMTQDLRGAN EKLAVAEVRA ENLKKEKEML
801KLSEVRLSQ
 QRESLLAEQR GQNLLLTNLQ TIQGILERSE
841TETKQRLSSQ IEKLEHEISH LKKKLENEVE QRHTLTRNLD
881VQLLDTKRQL 
DTETNLHLN TKELLKNAQK EIATLKQHLS
921NMEVQVASQS SQRTGKGQPS NKEDVDDLVS QLRQTEEQVN
961DLKERLKTST S
NVEQYQAM VTSLEESLNK EKQVTEEVRK
1001NIEVRLKESA EFQTQLEKKL MEVEKEKQEL QDDKRRAIES
1041MEQQLSELKK TL
SSVQNEV QEALQRASTA LSNEQQARRD
1081CQEQAKIAVE AQNKYERELM LHAADVEALQ AAKEQVSKMA
1121SVRQHLEETT QKA
ESQLLE CKASWEERER MLKDEVSKCV
1161CRCEDLEKQN RLLHDQIEKL SDKVVASVKE GVQGPLNVSL
1201SEEGKSQEQI LEIL
RFIRR EKEIAETRFE VAQVESLRYR
1241QRVELLEREL QELQDSLNAE REKVQVTAKT MAQHEELMKK
1281TETMNVVMET NKMLR
EEKE RLEQDLQQMQ AKVRKLELDI
1321LPLQEANAEL SEKSGMLQAE KKLLEEDVKR WKARNQHLVS
1361QQKDPDTEEY RKLLSE
KEV HTKRIQQLTE EIGRLKAEIA
1401RSNASLTNNQ NLIQSLKEDL NKVRTEKETI QKDLDAKIID
1441IQEKVKTITQ VKKIGRR
YK TQYEELKAQQ DKVMETSAQS
1481SGDHQEQHVS VQEMQELKET LNQAETKSKS LESQVENLQK
1521TLSEKETEAR NLQEQTVQ
L QSELSRLRQD LQDRTTQEEQ
1561LRQQITEKEE KTRKAIVAAK SKIAHLAGVK DQLTKENEEL
1601KQRNGALDQQ KDELDVRIT
 ALKSQYEGRI SRLERELREH
1641QERHLEQRDE PQEPSNKVPE QQRQITLKTT PASGERGIAS
1681TSDPPTANIK PTPVVSTPSK 
VTAAAMAGN KSTPRASIRP
1721MVTPATVTNP TTTPTATVMP TTQVESQEAM QSEGPVEHVP
1761VFGSTSGSVR STSPNVQPSI S
QPILTVQQ QTQATAFVQP
1801TQQSHPQIEP ANQELSSNIV EVVQSSPVER PSTSTAVFGT
1841VSATPSSSLP KRTREEEEDS TI
EASDQVS DDTVEMPLPK
1881KLKSVTPVGT EEEVMAEEST DGEVETQVYN QDSQDSIGEG
1921VTQGDYTPME DSEETSQSLQ IDL
GPLQSD QQTTTSSQDG
1961QGKGDDVIVI DSDDEEEDDD ENDGEHEDYE EDEEDDDDDE
2001DDTGMGDEGE DSNEGTGSAD GNDG
YEADD AEGGDGTDPG
2041TETEESMGGG EGNHRAADSQ NSGEGNTGAA ESSFSQEVSR
2081EQQPSSASER QAPRAPQSPR RPPHP
LPPR LTIHAPPQEL
2121GPPVQRIQMT RRQSVGRGLQ LTPGIGGMQQ HFFDDEDRTV
2161PSTPTLVVPH RTDGFAEAIH SPQVAG
VPR FRFGPPEDMP
2201QTSSSHSDLG QLASQGGLGM YETPLFLAHE EESGGRSVPT
2241TPLQVAAPVT VFTESTTSDA SEHASQS
VP MVTTSTGTLS
2281TTNETATGDD GDEVFVEAES EGISSEAGLE IDSQQEEEPV
2321QASDESDLPS TSQDPPSSSS VDTSSSQP
K PFRRVRLQTT
2361LRQGVRGRQF NRQRGVSHAM GGRGGINRGN IN

Structure predicted by AlphaFold DB(UniProt: P12270). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).

SNP variants of TPR: Showing partial SNPs

rs1285180 rs2297226 rs3737937 rs3831933 rs6425027 rs6425028 rs12733799 rs57930082 rs74316457 rs75545265 rs76693685 rs76991105 rs77032751 rs79923164 rs111555426 rs112524494 rs112597707

Tissue expression of TPR: [UniProt]

Forward Primer

Forward Tm

Reverse Primer

Reverse Tm

Score

CATTCCATTACATGCTTCAAGC

GAAACAGTCTGTGATGTACTTGG

CTTTCACAACAGATTAGAGTGC

GCTTACTTCCTCATCACGA

GTCGCAGAAGTAAGAGCAG

TCTCTTTGCTGAGAAAGACG

GAAGCTGATGATGCTGAGG

CCCATACTTTCTTCTGTTTCTG

CTTTCACAACAGATTAGAGTGC

GCTTACTTCCTCATCACGA

TTATGAAGCTGATGATGCTGAG

TTCTTCTGTTTCTGTACCTGGA

GCTCATGAAGAAGAGTCAGG

CTCAGTAAATACAGTCACTGGG

AAATGCTGAGCTGAGTGAG

TTACTAGATGCTGGTTACGTG

CTGTTACAAATCCCACTACTACC

CTGACTGCATAGCTTCCTG

AAGTTCCTTGCTGATCAGC

TACTGTTGTTCGCTCTCCA

Subcellular localization of TPR (and its protein):

[UniProt] [GenomeNet]

plasma membrane
cytoplasm
extracellular
golgi
vesicle
cytoskeleton
endoplasmic reticulum
nucleus
endosome
lysosome
mitochondrion

Gene Ontology (GO) terms for TPR:

GO ID

Protein

Source DB

GO:0000122

P12270 (UniProtKB)

IMP

GO:0000189

P12270 (UniProtKB)

IMP

GO:0000776

P12270 (UniProtKB)

IDA

GO:0003674

P12270 (UniProtKB)

GO:0003682

P12270 (UniProtKB)

IDA

GO:0003729

P12270 (UniProtKB)

IDA

GO:0005487

P12270 (UniProtKB)

IDA

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005515

P12270 (UniProtKB)

IPI

GO:0005575

P12270 (UniProtKB)

GO:0005634

P12270 (UniProtKB)

IDA

GO:0005635

P12270 (UniProtKB)

IDA

GO:0005635

P12270 (UniProtKB)

IDA

GO:0005643

P12270 (UniProtKB)

IDA

GO:0005643

P12270 (UniProtKB)

IDA

GO:0005643

P12270 (UniProtKB)

IDA

GO:0005643

P12270 (UniProtKB)

IDA

GO:0005643

P12270 (UniProtKB)

IDA

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005654

P12270 (UniProtKB)

TAS

GO:0005737

P12270 (UniProtKB)

IDA

GO:0005737

P12270 (UniProtKB)

IDA

GO:0005868

P12270 (UniProtKB)

IDA

GO:0006404

P12270 (UniProtKB)

IDA

GO:0006405

P12270 (UniProtKB)

IMP

GO:0006406

P12270 (UniProtKB)

TAS

GO:0006406

P12270 (UniProtKB)

TAS

GO:0006406

P12270 (UniProtKB)

TAS

GO:0006409

P12270 (UniProtKB)

TAS

GO:0006999

P12270 (UniProtKB)

IMP

GO:0007067

P12270 (UniProtKB)

IEA

GO:0007077

P12270 (UniProtKB)

TAS

GO:0007094

P12270 (UniProtKB)

IMP

GO:0007094

P12270 (UniProtKB)

IMP

GO:0008150

P12270 (UniProtKB)

GO:0010827

P12270 (UniProtKB)

TAS

GO:0010965

P12270 (UniProtKB)

IMP

GO:0015631

P12270 (UniProtKB)

IDA

GO:0016032

P12270 (UniProtKB)

TAS

GO:0016925

P12270 (UniProtKB)

TAS

GO:0016925

P12270 (UniProtKB)

TAS

GO:0016925

P12270 (UniProtKB)

TAS

GO:0019083

P12270 (UniProtKB)

TAS

GO:0019898

P12270 (UniProtKB)

IDA

GO:0031047

P12270 (UniProtKB)

TAS

GO:0031072

P12270 (UniProtKB)

IDA

GO:0031453

P12270 (UniProtKB)

IMP

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031965

P12270 (UniProtKB)

IDA

GO:0031990

P12270 (UniProtKB)

IDA

GO:0034399

P12270 (UniProtKB)

IDA

GO:0034399

P12270 (UniProtKB)

IDA

GO:0034399

P12270 (UniProtKB)

IDA

GO:0034399

P12270 (UniProtKB)

IDA

GO:0034399

P12270 (UniProtKB)

IDA

GO:0034399

P12270 (UniProtKB)

IDA

GO:0034605

P12270 (UniProtKB)

IDA

GO:0035457

P12270 (UniProtKB)

ISS

GO:0042307

P12270 (UniProtKB)

IMP

GO:0042405

P12270 (UniProtKB)

IDA

GO:0042405

P12270 (UniProtKB)

IDA

GO:0042803

P12270 (UniProtKB)

IDA

GO:0042803

P12270 (UniProtKB)

IDA

GO:0044615

P12270 (UniProtKB)

IDA

GO:0044615

P12270 (UniProtKB)

IDA

GO:0044615

P12270 (UniProtKB)

IDA

GO:0044822

P12270 (UniProtKB)

IDA

GO:0045947

P12270 (UniProtKB)

IMP

GO:0046827

P12270 (UniProtKB)

ISS

GO:0046832

P12270 (UniProtKB)

IMP

GO:0046832

P12270 (UniProtKB)

IDA

GO:0051019

P12270 (UniProtKB)

IDA

GO:0051301

P12270 (UniProtKB)

IEA

GO:0070840

P12270 (UniProtKB)

IDA

GO:0070849

P12270 (UniProtKB)

IDA

GO:0072686

P12270 (UniProtKB)

IDA

GO:0075733

P12270 (UniProtKB)

TAS

GO:0090267

P12270 (UniProtKB)

IMP

GO:0090316

P12270 (UniProtKB)

IMP

GO:1900034

P12270 (UniProtKB)

TAS

GO:1901673

P12270 (UniProtKB)

IMP

GO:0000776

P12270 (UniProtKB)

IDA

GO:0005215

P12270 (UniProtKB)

IMP

GO:0006606

P12270 (UniProtKB)

IMP

GO:0006606

P12270 (UniProtKB)

IDA

GO:0006611

P12270 (UniProtKB)

IMP

GO:0006999

P12270 (UniProtKB)

IMP

GO:0010793

P12270 (UniProtKB)

IMP

GO:0031647

P12270 (UniProtKB)

IMP

GO:0042306

P12270 (UniProtKB)

IMP

GO:0043495

P12270 (UniProtKB)

IMP

GO:0043578

P12270 (UniProtKB)

IMP

GO:0046825

P12270 (UniProtKB)

IMP

GO:0051292

P12270 (UniProtKB)

IMP

GO:0000776

P12270 (UniProtKB)

IDA

microRNAs potentially regulating TPR:

hsa-miR-375 hsa-miR-1180 hsa-miR-378* hsa-miR-615-3p

String

BioGrid

IntAct

mentha

MINT

Reactome

Loading…

Interacting Gene	Interaction	Source/Score

KEGG
Reactomepathway

Name
3013 RNA transport [PATH:hsa03013]
5200 Pathways in cancer [PATH:hsa05200]
5216 Thyroid cancer [PATH:hsa05216]

Name
Antiviral mechanism by IFN-stimulated genes
Cell Cycle
Cell Cycle, Mitotic
Cellular response to heat stress
Cellular responses to stress
Cytokine Signaling in Immune system
Disease
Export of Viral Ribonucleoproteins from Nucleus
Gene Expression
Glucose transport
Hexose transport
HIV Infection
HIV Life Cycle
Host Interactions of HIV factors
Infectious disease
Influenza Infection
Influenza Life Cycle
Influenza Viral RNA Transcription and Replication
Interactions of Rev with host cellular proteins
Interactions of Vpr with host cellular proteins
Interferon Signaling
ISG15 antiviral mechanism
Late Phase of HIV Life Cycle
M Phase
Metabolism of carbohydrates
Metabolism of non-coding RNA
Metabolism of proteins
Mitotic Prophase
NEP/NS2 Interacts with the Cellular Export Machinery
Nuclear Envelope Breakdown
Nuclear import of Rev protein
Nuclear Pore Complex (NPC) Disassembly
Post-translational protein modification
Processing of Capped Intron-Containing Pre-mRNA
Regulation of Glucokinase by Glucokinase Regulatory Protein
Regulation of HSF1-mediated heat shock response
Regulatory RNA pathways
Rev-mediated nuclear export of HIV RNA
SLC-mediated transmembrane transport
snRNP Assembly
SUMO E3 ligases SUMOylate target proteins
SUMOylation
SUMOylation of DNA damage response and repair proteins
Transcriptional regulation by small RNAs
Transmembrane transport of small molecules
Transport of Mature mRNA derived from an Intron-Containing Transcript
Transport of Mature mRNA Derived from an Intronless Transcript
Transport of Mature mRNAs Derived from Intronless Transcripts
Transport of Mature Transcript to Cytoplasm
Transport of Ribonucleoproteins into the Host Nucleus
Transport of the SLBP Dependant Mature mRNA
Transport of the SLBP independent Mature mRNA
Viral Messenger RNA Synthesis
Vpr-mediated nuclear import of PICs

Disease

Score

NofPmids

NofSnps

Source

Disease	Score	NofPmids	NofSnps	Source
Papillary thyroid carcinoma	0.120271442	1	0	BeFree_ORPHANET
Thyroid Neoplasm	0.12	1	0	CTD_human
Ependymoma	0.00272435	1	0	LHGDN
Stomach Carcinoma	0.000542884	2	0	BeFree
FANCONI ANEMIA, COMPLEMENTATION GROUP A (disorder)	0.000271442	1	0	BeFree
Glioblastoma	0.000271442	1	0	BeFree
Fanconi Anemia	0.000271442	1	0	BeFree
Spastic syndrome	0.000271442	1	0	BeFree
PITUITARY ADENOMA PREDISPOSITION (disorder)	0.000271442	1	0	BeFree
Metastatic malignant neoplasm to brain	0.000271442	1	0	BeFree

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TPR (translocated promoter region, nuclear basket protein)

Gene Basic Information

Gene Basic Information

Chromosome Location

Chromosome Location

Gene Summary

Gene Summary

Gene Sequence

Gene Sequence

Encoded Protein

Encoded Protein

Gene Variants

Gene Variants

Gene Expression

Gene Expression

Gene Primers

Gene Primers

Gene Ontology

Related microRNA

Related microRNA

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Gene Interactions

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Gene Pathways

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