PKD2 (polycystin 2, transient receptor potential cation channel)

symbol
PKD2
locus group
protein-coding gene
location
4q22.1
gene_family
Transient receptor potential cation channels|EF-hand domain containing
alias symbol
PKD4|PC2|Pc-2|TRPP2
alias name
transient receptor potential catio…
entrez id
5311
ensembl gene id
ENSG00000118762
ucsc gene id
uc003hre.4
refseq accession
NM_000297
hgnc_id
HGNC:9009
approved reserved
1988-08-07
4q22.1
ChineseEnglish

The PKD2 gene encodes polycystin-2, a non-selective cation channel belonging to the transient receptor potential (TRP) channel family, specifically within the TRPP subfamily. This protein is predominantly localized to the primary cilium and the plasma membrane, where it serves as a mechanosensitive calcium channel that transduces fluid shear stress signals into intracellular calcium transients. PKD2 is widely expressed in various tissues, including the kidney, liver, and pancreas, and functions critically in regulating cellular processes such as proliferation, differentiation, and apoptosis by modulating intracellular calcium homeostasis. It forms a heteromeric complex with polycystin-1, the product of the PKD1 gene, to maintain the structural integrity and functional polarity of renal tubular epithelial cells. Loss-of-function mutations in PKD2 lead to autosomal dominant polycystic kidney disease (ADPKD), a condition characterized by the progressive formation and expansion of renal cysts that ultimately result in renal failure, often accompanied by hepatic cysts, hypertension, and cardiovascular abnormalities. These mutations disrupt the normal calcium signaling cascade and impair ciliary function, thereby promoting cystogenesis. Furthermore, the PKD2 protein interacts with other family members, such as PKD1 and PKDL, to facilitate mechanosensation and intercellular communication. Dysregulation of PKD2 expression, whether through overexpression or downregulation, can perturb calcium signaling and ciliary integrity, and emerging evidence suggests that aberrant PKD2 activity may also intersect with developmental signaling pathways such as Wnt and mTOR, potentially contributing to tumorigenesis.

Nucleotide sequence of PKD2:[NCBI]
Loading Gene Browser...
Protein Sequence
1MVNSSRVQPQ QPGDAKRPPA PRAPDPGRLM AGCAAVGASL
41AAPGGLCEQR GLEIEMQRIR QAAARDPPAG AAASPSPPLS
81 SCSRQAWSR DNPGFEAEEE EEEVEGEEGG MVVEMDVEWR
121PGSRRSAASS AVSSVGARSR GLGGYHGAGH PSGRRRRRED
161Q GPPCPSPV GGGDPLHRHL PLEGQPPRVA WAERLVRGLR
201GLWGTRLMEE SSTNREKYLK SVLRELVTYL LFLIVLCILT
241YG MMSSNVY YYTRMMSQLF LDTPVSKTEK TNFKTLSSME
281DFWKFTEGSL LDGLYWKMQP SNQTEADNRS FIFYENLLLG
321VPR IRQLRV RNGSCSIPQD LRDEIKECYD VYSVSSEDRA
361PFGPRNGTAW IYTSEKDLNG SSHWGIIATY SGAGYYLDLS
401RTRE ETAAQ VASLKKNVWL DRGTRATFID FSVYNANINL
441FCVVRLLVEF PATGGVIPSW QFQPLKLIRY VTTFDFFLAA
481CEIIF CFFI FYYVVEEILE IRIHKLHYFR SFWNCLDVVI
521VVLSVVAIGI NIYRTSNVEV LLQFLEDQNT FPNFEHLAYW
561QIQFNN IAA VTVFFVWIKL FKFINFNRTM SQLSTTMSRC
601AKDLFGFAIM FFIIFLAYAQ LAYLVFGTQV DDFSTFQECI
641FTQFRII LG DINFAEIEEA NRVLGPIYFT TFVFFMFFIL
681LNMFLAIIND TYSEVKSDLA QQKAEMELSD LIRKGYHKAL
721VKLKLKKN T VDDISESLRQ GGGKLNFDEL RQDLKGKGHT
761DAEIEAIFTK YDQDGDQELT EHEHQQMRDD LEKEREDLDL
801DHSSLPRPM SSRSFPRSLD DSEEDDDEDS GHSSRRRGSI
841SSGVSYEEFQ VLVRRVDRME HSIGSIVSKI DAVIVKLEIM
881ERAKLKRREV LGRLLDGVA EDERLGRDSE IHREQMERLV
921REELERWESD DAASQISHGL GTPVGLNGQP RPRSSRPSSS
961QSTEGMEGAG G NGSSNVHV
Structure predicted by AlphaFold DB(UniProt: Q13563). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of PKD2:           Showing partial SNPs
rs188404890       rs528032459       rs533230301       rs549682490       rs560282851       rs858       rs10965       rs1131408       rs1801612       rs1805044       rs2234917       rs2467052       rs2725201       rs2725202       rs2725203       rs2725204       rs2725205      

Tissue expression of PKD2:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
CTTCTGGAAGTTCACAGAAGG
59
GTTGTCAGCTTCAGTCTGG
59
TCAGATCTTATCAGAAAGGGCT
59
CTCTGAAATGTCATCCACGG
59
CTTCTGGAAGTTCACAGAAGG
59
TTGTCAGCTTCAGTCTGGT
59
CTTACGAAGAGTTTCAAGTCCTG
60
CGTCAATCTTGGACACTATGC
60
TTCTGGAAGTTCACAGAAGG
58
GTTGTCAGCTTCAGTCTGG
59
CTCTGAAGTGAAATCTGACTTGG
60
GCTTTATGGTAGCCCTTTCTG
59

Subcellular localization of PKD2 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for PKD2:

GO ID
Protein
Source DB
GO:0005509
B4DFN3 (UniProtKB)
IEA
GO:0016021
B4DFN3 (UniProtKB)
IEA
GO:0001658
Q13563 (UniProtKB)
IEP
GO:0001889
Q13563 (UniProtKB)
IEP
GO:0001892
Q13563 (UniProtKB)
ISS
GO:0001947
Q13563 (UniProtKB)
IMP
GO:0002133
Q13563 (UniProtKB)
ISS
GO:0003127
Q13563 (UniProtKB)
ISS
GO:0005102
Q13563 (UniProtKB)
IPI
GO:0005244
Q13563 (UniProtKB)
IDA
GO:0005245
Q13563 (UniProtKB)
IDA
GO:0005245
Q13563 (UniProtKB)
IDA
GO:0005248
Q13563 (UniProtKB)
IDA
GO:0005267
Q13563 (UniProtKB)
ISS
GO:0005509
Q13563 (UniProtKB)
ISS
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005515
Q13563 (UniProtKB)
IPI
GO:0005737
Q13563 (UniProtKB)
IDA
GO:0005737
Q13563 (UniProtKB)
IMP
GO:0005783
Q13563 (UniProtKB)
IDA
GO:0005783
Q13563 (UniProtKB)
IDA
GO:0005783
Q13563 (UniProtKB)
IDA
GO:0005783
Q13563 (UniProtKB)
IMP
GO:0005783
Q13563 (UniProtKB)
IDA
GO:0005789
Q13563 (UniProtKB)
IDA
GO:0005789
Q13563 (UniProtKB)
IDA
GO:0005829
Q13563 (UniProtKB)
IEA
GO:0005886
Q13563 (UniProtKB)
IDA
GO:0005886
Q13563 (UniProtKB)
IDA
GO:0005887
Q13563 (UniProtKB)
IDA
GO:0005929
Q13563 (UniProtKB)
ISS
GO:0006816
Q13563 (UniProtKB)
ISS
GO:0006816
Q13563 (UniProtKB)
IDA
GO:0007050
Q13563 (UniProtKB)
ISS
GO:0007259
Q13563 (UniProtKB)
ISS
GO:0007368
Q13563 (UniProtKB)
ISS
GO:0007507
Q13563 (UniProtKB)
IEP
GO:0008092
Q13563 (UniProtKB)
IDA
GO:0008285
Q13563 (UniProtKB)
NAS
GO:0009925
Q13563 (UniProtKB)
IDA
GO:0021510
Q13563 (UniProtKB)
IEP
GO:0021915
Q13563 (UniProtKB)
IEP
GO:0022843
Q13563 (UniProtKB)
IDA
GO:0030027
Q13563 (UniProtKB)
IDA
GO:0030814
Q13563 (UniProtKB)
ISS
GO:0031512
Q13563 (UniProtKB)
ISS
GO:0031513
Q13563 (UniProtKB)
ISS
GO:0031587
Q13563 (UniProtKB)
IMP
GO:0031659
Q13563 (UniProtKB)
IDA
GO:0034614
Q13563 (UniProtKB)
NAS
GO:0035502
Q13563 (UniProtKB)
IEP
GO:0035725
Q13563 (UniProtKB)
IDA
GO:0035904
Q13563 (UniProtKB)
IEP
GO:0036064
Q13563 (UniProtKB)
IDA
GO:0042127
Q13563 (UniProtKB)
IMP
GO:0042802
Q13563 (UniProtKB)
ISS
GO:0042802
Q13563 (UniProtKB)
IPI
GO:0042803
Q13563 (UniProtKB)
IDA
GO:0042805
Q13563 (UniProtKB)
IDA
GO:0042994
Q13563 (UniProtKB)
IMP
GO:0043398
Q13563 (UniProtKB)
IPI
GO:0044325
Q13563 (UniProtKB)
IPI
GO:0045180
Q13563 (UniProtKB)
IDA
GO:0045429
Q13563 (UniProtKB)
IMP
GO:0045944
Q13563 (UniProtKB)
IDA
GO:0045944
Q13563 (UniProtKB)
IMP
GO:0048763
Q13563 (UniProtKB)
IDA
GO:0050982
Q13563 (UniProtKB)
ISS
GO:0050982
Q13563 (UniProtKB)
IBA
GO:0051117
Q13563 (UniProtKB)
ISS
GO:0051209
Q13563 (UniProtKB)
IDA
GO:0051209
Q13563 (UniProtKB)
IMP
GO:0051219
Q13563 (UniProtKB)
IPI
GO:0051298
Q13563 (UniProtKB)
NAS
GO:0051371
Q13563 (UniProtKB)
IEA
GO:0060078
Q13563 (UniProtKB)
IEA
GO:0060170
Q13563 (UniProtKB)
IEA
GO:0060315
Q13563 (UniProtKB)
ISS
GO:0060674
Q13563 (UniProtKB)
ISS
GO:0061333
Q13563 (UniProtKB)
ISS
GO:0061441
Q13563 (UniProtKB)
IEP
GO:0070062
Q13563 (UniProtKB)
IDA
GO:0070588
Q13563 (UniProtKB)
IDA
GO:0071158
Q13563 (UniProtKB)
IMP
GO:0071458
Q13563 (UniProtKB)
IDA
GO:0071464
Q13563 (UniProtKB)
IDA
GO:0071470
Q13563 (UniProtKB)
IDA
GO:0071498
Q13563 (UniProtKB)
IMP
GO:0071556
Q13563 (UniProtKB)
IDA
GO:0071805
Q13563 (UniProtKB)
IEA
GO:0071910
Q13563 (UniProtKB)
IMP
GO:0072075
Q13563 (UniProtKB)
IEP
GO:0072164
Q13563 (UniProtKB)
IEP
GO:0072177
Q13563 (UniProtKB)
IEP
GO:0072208
Q13563 (UniProtKB)
IEP
GO:0072214
Q13563 (UniProtKB)
IEP
GO:0072218
Q13563 (UniProtKB)
IEP
GO:0072219
Q13563 (UniProtKB)
IEP
GO:0072235
Q13563 (UniProtKB)
IEP
GO:0072284
Q13563 (UniProtKB)
IEP
GO:0072686
Q13563 (UniProtKB)
IDA
GO:0090279
Q13563 (UniProtKB)
IDA
GO:2000134
Q13563 (UniProtKB)
IMP
GO:0005911
Q13563 (UniProtKB)
ISS
GO:0031941
Q13563 (UniProtKB)
IDA

microRNAs potentially regulating PKD2:     

String
BioGrid
IntAct
mentha
MINT
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
Polycystic kidney disease, type 2 0.320542884 8 7 BeFree_CLINVAR_MGD_UNIPROT
Polycystic Kidney, Autosomal Dominant 0.181213836 191 0 BeFree_CTD_human_GAD_LHGDN
Vascular Diseases 0.120271442 2 0 BeFree_CTD_human
Neurodegenerative Disorders 0.12 1 0 CTD_human
Retinal Diseases 0.12 1 0 CTD_human
Acute kidney injury 0.08 1 0 RGD
Polycystic Kidney Diseases 0.018326021 33 0 BeFree_GAD_LHGDN
Kidney Failure, Chronic 0.004614512 17 0 BeFree
Simple renal cyst 0.00434307 16 0 BeFree
Cyst 0.004071628 15 0 BeFree
Protein kinase D: Integrating cancer and metabolic disorders.
Shemy A, Sanchez B, Mizuno H, Van Lint J, Voet A Mol Aspects Med IF: 13.8 2026-01-25
A C. elegans model for functional analysis of conserved ADPKD variants in cilia, extracellular vesicles, and sensory signaling.
Wang J, Nava Cruz C, Walsh JD, desRanleau E, Nikonorova IA, Barr MM Genetics IF: 6.5 2026-07-13
Common bile duct dilatation on MRI in autosomal dominant polycystic kidney disease.
Sattar U, Zhu C, Yin X, Luo X, Bazojoo V, Prince AS, Rennert H, Brandman D, Schonfeld E, Blumenfeld JD, Prince MR Abdom Radiol (NY) IF: 2.3 2025-07-17
Typical and atypical ADPKD: predicted pathogenic genetic variants and population frequencies.
Varughese S, Huang M, Savige J Nephrol Dial Transplant IF: 8.3 2025-08-14
Sodium-Glucose Cotransporter 2 Inhibitors in Autosomal Dominant Polycystic Kidney Disease: Mechanistic Insights and Therapeutic Promise.
Bou Antoun MT, Borghol AH, Souvalian L, Hadla M, Abboud G, Ghanem A, Munairdjy Debeh FG, Mardirossian JM, Salih M, Garimella PS, Vallon V, Chebib FT J Am Soc Nephrol IF: 9.7 2025-11-10
Autosomal dominant polycystic kidney disease: Current perspectives in 2026.
Pichette M, Park M, Cornec-Le Gall E Rev Med Interne 2026-06-18
Clinical impact of genetic testing in inherited kidney diseases.
Merz LM, Stopp S, Krey I, Baalmann F, Marczak E, Liebmann N, Hempel O, Krüger BM, Engesser M, Teichmann AC, Schnabel F, Jamra RA, Lemke J, Bergmann C, Lindner TH, de Fallois J, Münch J, Halbritter J, Dittrich K, Petzold F Clin Kidney J IF: 5.3 2026-07-00
Empagliflozin in ADPKD with suspected IgA nephropathy: antiproteinuric response without adverse events.
Uruci S, Tanzarella E, Bianca P, Paolisi M, Kola K, De Rosa LI, Catania M, Barruscotti A, Rivera RF, Lanzani CL, Vezzoli G, Alibrandi MTS BMC Nephrol IF: 2.4 2026-06-23
Parathyroid Hormone Receptor 1 Facilitates Cyst Growth in Genetic Models of Autosomal Dominant Polycystic Kidney Disease.
Wu Z, Sun M, Hu M, Yu Q, Wang P, Luo L, Ma M J Am Soc Nephrol IF: 9.7 2026-06-24

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