MYCN (MYCN proto-oncogene, bHLH transcription factor)

symbol
MYCN
locus group
protein-coding gene
location
2p24.3
gene_family
Basic helix-loop-helix proteins
alias symbol
bHLHe37|N-myc|MYCNOT
alias name
None
entrez id
4613
ensembl gene id
ENSG00000134323
ucsc gene id
uc002rci.4
refseq accession
NM_005378
hgnc_id
HGNC:7559
approved reserved
2001-06-22
2p24.3
ChineseEnglish

The MYCN gene, located on the short arm of human chromosome 2 (2p24.3), encodes a critical oncoprotein that is a core member of the MYC transcription factor family, which also includes C-MYC and L-MYC. As a basic helix-loop-helix (bHLH) leucine zipper (LZ) protein, MYCN functions as a master regulator of gene expression by binding to specific DNA sequences, thereby orchestrating essential biological processes such as cell proliferation, differentiation, apoptosis, metabolic reprogramming, and stem cell maintenance. While MYCN expression is tightly restricted and generally low in adult tissues, it plays a pivotal role in embryonic development, particularly in driving the proliferation and differentiation of neural progenitor cells. In pathological contexts, MYCN is frequently amplified or overexpressed in aggressive malignancies, most notably neuroblastoma, small cell lung cancer, and medulloblastoma, where it promotes tumorigenesis by accelerating cell cycle progression, inhibiting differentiation, enhancing glycolytic metabolism, and preserving tumor stem cell properties. Although point mutations are rare, gene amplification serves as a significant adverse prognostic indicator, particularly in neuroblastoma, and often synergizes with other oncogenic signaling pathways, such as ALK and RAS/MAPK, to drive tumor progression and therapeutic resistance. Conversely, the downregulation of MYCN can induce differentiation or apoptosis, highlighting its potential as a therapeutic target; however, its essential role in normal development and its complex interactions with the tumor microenvironment, including the regulation of microRNAs like the let-7 family, present significant challenges for treatment strategies that include BET inhibitors, downstream pathway targeting, and immunotherapy.

Nucleotide sequence of MYCN:[NCBI]
Loading Gene Browser...
Protein Sequence
1MPSCSTSTMP GMICKNPDLE FDSLQPCFYP DEDDFYFGGP
41DSTPPGEDIW KKFELLPTPP LSPSRGFAEH SSEPPSWVTE
81 MLLENELWG SPAEEDAFGL GGLGGLTPNP VILQDCMWSG
121FSAREKLERA VSEKLQHGRG PPTAGSTAQS PGAGAASPAG
161R GHGGAAGA GRAGAALPAE LAHPAAECVD PAVVFPFPVN
201KREPAPVPAA PASAPAAGPA VASGAGIAAP AGAPGVAPPR
241PG GRQTSGG DHKALSTSGE DTLSDSDDED DEEEDEEEEI
281DVVTVEKRRS SSNTKAVTTF TITVRPKNAA LGPGRAQSSE
321LIL KRCLPI HQQHNYAAPS PYVESEDAPP QKKIKSEASP
361RPLKSVIPPK AKSLSPRNSD SEDSERRRNH NILERQRRND
401LRSS FLTLR DHVPELVKNE KAAKVVILKK ATEYVHSLQA
441EEHQLLLEKE KLQARQQQLL KKIEHARTC
Structure predicted by AlphaFold DB(UniProt: P04198). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of MYCN:           Showing partial SNPs
rs9653226       rs11886063       rs13034994       rs35648249       rs41264197       rs41264199       rs41295950       rs57961569       rs61613914       rs74848979       rs75731159       rs78264801       rs79884090       rs111360717       rs111645698       rs111866702       rs112433036      

Tissue expression of MYCN:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
CAGATGATGAAGATGATGAAGAGG
59
TGATGGTGAATGTGGTGAC
58
CAGATGATGAAGATGATGAAGAGG
59
GATGGTGAATGTGGTGACAG
59
CAGATGATGAAGATGATGAAGAGG
59
ATGGTGAATGTGGTGACAG
58
Transcription Factors
Target Gene
Interaction Type
PubMed References
E2F1
MYCN
Activation
ENO1
MYCN
Unknown
HDAC2
MYCN
Unknown
HOXA10
MYCN
Repression
HOXA9
MYCN
Activation
MXI1
MYCN
Unknown
MYCN
ABCB1
Repression
MYCN
ABCC1
Activation
MYCN
ABCC1
Unknown
MYCN
BAX
Activation

Subcellular localization of MYCN (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for MYCN:

GO ID
Protein
Source DB
GO:0000785
P04198 (UniProtKB)
TAS
GO:0001502
P04198 (UniProtKB)
IEA
GO:0002053
P04198 (UniProtKB)
IEA
GO:0003677
P04198 (UniProtKB)
TAS
GO:0003700
P04198 (UniProtKB)
IEA
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005515
P04198 (UniProtKB)
IPI
GO:0005634
P04198 (UniProtKB)
IDA
GO:0006351
P04198 (UniProtKB)
IEA
GO:0006357
P04198 (UniProtKB)
TAS
GO:0010628
P04198 (UniProtKB)
IDA
GO:0010942
P04198 (UniProtKB)
IEA
GO:0030324
P04198 (UniProtKB)
IEA
GO:0042733
P04198 (UniProtKB)
IEA
GO:0045607
P04198 (UniProtKB)
IEA
GO:0045893
P04198 (UniProtKB)
IMP
GO:0045944
P04198 (UniProtKB)
IEA
GO:0046983
P04198 (UniProtKB)
IEA
GO:0048704
P04198 (UniProtKB)
IEA
GO:0048712
P04198 (UniProtKB)
IEA
GO:0048754
P04198 (UniProtKB)
IEA
GO:2000378
P04198 (UniProtKB)
IEA

microRNAs potentially regulating MYCN:     

String
BioGrid
IntAct
mentha
MINT
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
Oculodigitoesophagoduodenal syndrome 0.481357209 7 6 BeFree_CLINVAR_CTD_human_ORPHANET_UNIPROT
Neuroblastoma 0.333621751 708 2 BeFree_CTD_human_LHGDN_ORPHANET
Medulloblastoma 0.129510397 26 0 BeFree_CTD_human_LHGDN
Hyperplasia 0.12 1 0 CTD_human
Necrosis 0.12 1 0 CTD_human
Neoplastic Cell Transformation 0.12 1 0 CTD_human
Neural crest tumor 0.12 0 0 ORPHANET
Chromosome Aberrations 0.12 1 0 CTD_human
Adenoid Cystic Carcinoma 0.12 1 0 CTD_human
Central neuroblastoma 0.08 610 2 BeFree
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CDCA7 Promotes Neuroblastoma Proliferation via Regulating the Cell Cycle.
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Targeting MYC-Driven Cancers: From Oncogenic Addiction to Therapeutic Vulnerability.
Sainero-Alcolado L, Lama D, Alzrigat M, Arsenian-Henriksson M BioDrugs IF: 8.5 2026-09-02
Integrative precision oncology in neuroblastoma: multi-omics biomarkers, molecular targets, and immunotherapeutic strategies.
Singh A, Goel N, Mehndiratta S, Chaudhry A, Kaur M, Swain SK, Prabhakar P, Misra A, Rishi B Front Oncol IF: 3.4 None
AOSNP-ADAPTR resource level-based recommendations on practical diagnostic strategies for medulloblastomas and other embryonal tumors.
Sarkar C, Al-Hussaini M, Santosh V, Suri V, Park SH, Piao YS, Tihan T, Ng HK, Buckland M, Jalali R, Kanemura Y, Wesseling P, Komori T Brain Pathol IF: 5.0 2026-08-29

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