COL7A1 (collagen type VII alpha 1 chain)

symbol
COL7A1
locus group
protein-coding gene
location
3p21.31
gene_family
Collagens|Fibronectin type III domain containing
alias symbol
-
alias name
collagen VII, alpha-1 polypeptide|…
entrez id
1294
ensembl gene id
ENSG00000114270
ucsc gene id
uc003ctz.3
refseq accession
NM_000094
hgnc_id
HGNC:2214
approved reserved
1991-11-01
3p21.31
ChineseEnglish

COL7A1 encodes the alpha-1 chain of type VII collagen, a critical structural component of anchoring fibrils that secures the dermal-epidermal junction by tethering the basement membrane to the underlying dermis. As a member of the collagen gene family, this gene produces a protein characterized by a central triple-helical domain composed of Gly-X-Y repeats, which assembles into stable trimers to maintain extracellular matrix integrity. The mature type VII collagen molecule features a C-terminal NC1 domain that binds laminin-332 and type IV collagen, while the N-terminal NC2 domain mediates dimerization to form antiparallel dimers, thereby establishing the robust anchoring fibril structure. Mutations in COL7A1 disrupt collagen synthesis or function, leading to dystrophic epidermolysis bullosa (DEB), a condition marked by increased skin fragility, blistering upon minor friction, and scarring, with severe cases potentially affecting mucosal tissues such as the esophagus and cornea. The severity of DEB correlates with the genetic mechanism; recessive severe forms often result in a complete absence of type VII collagen due to null mutations, whereas dominant mild forms are typically caused by dominant-negative mutations. Beyond its role in genetic disorders, COL7A1 expression is positively regulated by the TGF-β1 signaling pathway and is aberrantly elevated in fibrotic conditions like keloids and scleroderma, where it contributes to pathological collagen deposition, while reduced expression compromises mechanical skin stability. With over 800 pathogenic variants identified—including glycine substitutions that destabilize the triple helix, premature stop codons, and splice-site mutations—COL7A1 is also implicated in wound healing and tumor invasion, where its dysregulation may influence keratinocyte migration. Current therapeutic strategies for DEB are actively exploring gene-editing approaches, such as exon skipping and CRISPR/Cas9-mediated correction, to restore functional collagen expression.

Nucleotide sequence of COL7A1:[NCBI]
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Protein Sequence
1MTLRLLVAAL CAGILAEAPR VRAQHRERVT CTRLYAADIV
41FLLDGSSSIG RSNFREVRSF LEGLVLPFSG AASAQGVRFA
81 TVQYSDDPR TEFGLDALGS GGDVIRAIRE LSYKGGNTRT
121GAAILHVADH VFLPQLARPG VPKVCILITD GKSQDLVDTA
161A QRLKGQGV KLFAVGIKNA DPEELKRVAS QPTSDFFFFV
201NDFSILRTLL PLVSRRVCTT AGGVPVTRPP DDSTSAPRDL
241VL SEPSSQS LRVQWTAASG PVTGYKVQYT PLTGLGQPLP
281SERQEVNVPA GETSVRLRGL RPLTEYQVTV IALYANSIGE
321AVS GTARTT ALEGPELTIQ NTTAHSLLVA WRSVPGATGY
361RVTWRVLSGG PTQQQELGPG QGSVLLRDLE PGTDYEVTVS
401TLFG RSVGP ATSLMARTDA SVEQTLRPVI LGPTSILLSW
441NLVPEARGYR LEWRRETGLE PPQKVVLPSD VTRYQLDGLQ
481PGTEY RLTL YTLLEGHEVA TPATVVPTGP ELPVSPVTDL
521QATELPGQRV RVSWSPVPGA TQYRIIVRST QGVERTLVLP
561GSQTAF DLD DVQAGLSYTV RVSARVGPRE GSASVLTVRR
601EPETPLAVPG LRVVVSDATR VRVAWGPVPG ASGFRISWST
641GSGPESS QT LPPDSTATDI TGLQPGTTYQ VAVSVLRGRE
681EGPAAVIVAR TDPLGPVRTV HVTQASSSSV TITWTRVPGA
721TGYRVSWH S AHGPEKSQLV SGEATVAELD GLEPDTEYTV
761HVRAHVAGVD GPPASVVVRT APEPVGRVSR LQILNASSDV
801LRITWVGVT GATAYRLAWG RSEGGPMRHQ ILPGNTDSAE
841IRGLEGGVSY SVRVTALVGD REGTPVSIVV TTPPEAPPAL
881GTLHVVQRGE HSLRLRWEP VPRAQGFLLH WQPEGGQEQS
921RVLGPELSSY HLDGLEPATQ YRVRLSVLGP AGEGPSAEVT
961ARTESPRVPS I ELRVVDTS IDSVTLAWTP VSRASSYILS
1001WRPLRGPGQE VPGSPQTLPG ISSSQRVTGL EPGVSYIFSL
1041TPVLDGVRGP EA SVTQTPV CPRGLADVVF LPHATQDNAH
1081RAEATRRVLE RLVLALGPLG PQAVQVGLLS YSHRPSPLFP
1121LNGSHDLGII LQR IRDMPY MDPSGNNLGT AVVTAHRYML
1161APDAPGRRQH VPGVMVLLVD EPLRGDIFSP IREAQASGLN
1201VVMLGMAGAD PEQL RRLAP GMDSVQTFFA VDDGPSLDQA
1241VSGLATALCQ ASFTTQPRPE PCPVYCPKGQ KGEPGEMGLR
1281GQVGPPGDPG LPGRT GAPG PQGPPGSATA KGERGFPGAD
1321GRPGSPGRAG NPGTPGAPGL KGSPGLPGPR GDPGERGPRG
1361PKGEPGAPGQ VIGGEG PGL PGRKGDPGPS GPPGPRGPLG
1401DPGPRGPPGL PGTAMKG
Structure predicted by AlphaFold DB(UniProt: Q02388). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of COL7A1:           Showing partial SNPs
rs427245       rs1003649       rs1042469       rs1264194       rs1800013       rs1803298       rs2070771       rs2228561       rs2228563       rs2229818       rs2229820       rs2229821       rs2229822       rs2229824       rs2229825       rs2255532       rs2532847      

Tissue expression of COL7A1:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
AGGTGTGAAGGGAGATCTG
58
GGTCCTGGGATTCCTTCTC
59
CCTTGGGATAGTGATGACCC
60
TTATCTGGGCCTCAGTCCT
60
AGAGAAAGGAGAACGTGGAG
59
TCATCCACAGACACCTTGG
59
GATGTTGGCTTCATGGGTC
59
CCAGCTTCTCCCTTGTCTC
60
TTTGTCTATGGTGGCTGTG
58
CAGTACCTGGTGAGGACAG
59
TGATGGTTCTGCTAGTGGA
58
CATTAAGCCCAGAAGCCTG
59
CAAAGGAGACAAGGGAGAC
58
GTAAGACATACGTACCCGG
57
GACTCCCTGAGCTTGATCC
60
CAGATCTCCCTTCACACCTG
60
CTCTGACTCCTGATCCCTG
59
AGGCTGGAAGATGGTTATGAG
60
TTGTCTATGGTGGCTGTGG
60
TTATCTGGGCCTCAGTCCT
60
Transcription Factors
Target Gene
Interaction Type
PubMed References
NFKB1
COL7A1
Unknown
RELA
COL7A1
Unknown
SMAD3
COL7A1
Unknown
SMAD4
COL7A1
Unknown
SP1
COL7A1
Unknown

Subcellular localization of COL7A1 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for COL7A1:

GO ID
Protein
Source DB
GO:0000139
Q02388 (UniProtKB)
IEA
GO:0004867
Q02388 (UniProtKB)
IEA
GO:0005515
Q02388 (UniProtKB)
IPI
GO:0005515
Q02388 (UniProtKB)
IPI
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005576
Q02388 (UniProtKB)
TAS
GO:0005590
Q02388 (UniProtKB)
TAS
GO:0005604
Q02388 (UniProtKB)
IEA
GO:0005615
Q02388 (UniProtKB)
IDA
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0005788
Q02388 (UniProtKB)
TAS
GO:0006888
Q02388 (UniProtKB)
TAS
GO:0007155
Q02388 (UniProtKB)
IEA
GO:0008544
Q02388 (UniProtKB)
TAS
GO:0010951
Q02388 (UniProtKB)
IEA
GO:0030134
Q02388 (UniProtKB)
TAS
GO:0030134
Q02388 (UniProtKB)
TAS
GO:0030134
Q02388 (UniProtKB)
TAS
GO:0030134
Q02388 (UniProtKB)
TAS
GO:0030134
Q02388 (UniProtKB)
TAS
GO:0030134
Q02388 (UniProtKB)
TAS
GO:0030198
Q02388 (UniProtKB)
TAS
GO:0030574
Q02388 (UniProtKB)
TAS
GO:0033116
Q02388 (UniProtKB)
TAS
GO:0035987
Q02388 (UniProtKB)
IEP
GO:0042802
Q02388 (UniProtKB)
IEA
GO:0048208
Q02388 (UniProtKB)
TAS
GO:0031012
Q02388 (UniProtKB)
ISS

microRNAs potentially regulating COL7A1:     

String
BioGrid
IntAct
mentha
Reactome
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
Epidermolysis bullosa, pretibial 0.481085767 4 1 BeFree_CLINVAR_CTD_human_ORPHANET_UNIPROT
Transient bullous dermolysis of the newborn 0.480814326 4 3 BeFree_CLINVAR_CTD_human_ORPHANET_UNIPROT
Dominant dystrophic epidermolysis bullosa, albopapular type (disorder) 0.480271442 11 8 BeFree_CLINVAR_CTD_human_ORPHANET_UNIPROT
Hallopeau-Siemens Disease 0.458186605 79 16 BeFree_CLINVAR_MGD_ORPHANET_UNIPROT
Epidermolysis Bullosa Pruriginosa 0.362985861 12 1 BeFree_CTD_human_ORPHANET_UNIPROT
TOENAIL DYSTROPHY, ISOLATED 0.36 1 3 CLINVAR_CTD_human_UNIPROT
Epidermolysis Bullosa With Congenital Localized Absence Of Skin And Deformity Of Nails 0.24 0 1 CLINVAR_CTD_human
Epidermolysis Bullosa Dystrophica 0.194034701 96 0 BeFree_CTD_human_GAD_LHGDN
Mammary Neoplasms 0.12 1 0 CTD_human
Epidermolysis Bullosa Simplex Superficialis 0.12 0 0 ORPHANET
Esophageal Stricture in a 5-Year-Old Child with Epidermolysis Bullosa: Case Report of a Rare Complication at a Very Young Age.
Fernandes O, Vachher H, Bendre A, Shah D, Shah I Case Rep Gastroenterol IF: 0.6 None
Integrative transcriptomic and experimental analysis identifies collagen-associated hub genes bridging chronic hypersensitivity pneumonitis and lung cancer.
Dasgupta S, Saha B, Chakrabarty S, Das A, Ghosh M, Paul P, Chowdhury SR, Chaudhury K Comput Biol Chem IF: 3.4 2026-08-00
Observations of dystrophic epidermolysis bullosa patients with collagen VII NC2 truncation provide new insights into anchoring fibril assembly.
Momin NS, Bagci IS, Dolorito JA, Tufa SF, Tripathi P, Sridhar KJ, Keene DR, Marinkovich MP Matrix Biol IF: 5.9 2026-05-00
Reproductive Genetic Carrier Screening in Romania: A Couple-Based Study of Pathogenic Molecular Variants.
Gug M, Gug C, Jurca AA, Popoiu TA, Patrascu R, Roman PA, Olteanu L, Andreescu N Int J Mol Sci IF: 3.687 2026-04-17
Single-cell transcriptomics profiling elucidates RBP-driven metastatic signaling pathways in ER+ breast cancer.
Dong M, Li X, Yang S, Li S, Liu Z, Peng C, Li R, Liang W, Li X, Bai J iScience IF: 4.1 2026-06-19
Identification of a long-term surviving human mesenchymal stromal cell subpopulation and implications for recessive dystrophic epidermolysis bullosa treatment.
Bonnet des Claustres M, Gaucher S, Carbone F, Peltzer J, Luka M, Masson C, Nitschké P, Hovnanian A, Titeux M Stem Cell Res Ther IF: 7.3 2026-06-27
Intravenous gentamicin therapy in children with severe recessive dystrophic epidermolysis bullosa patients with nonsense COL7A1 mutations.
Lopez-Balboa P, Bageta ML, Alauddin S, Petrof G, Martinez AE Clin Exp Dermatol IF: 2.8 2026-06-23

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