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E-MTAB-8646 ERP119273 genotyping by high throughput sequencing Homo sapiens

Genome-wide CRISPR knockout screen in Huh7.5.1 human hepatocytes for the identification of host factors of hepatitis A virus

提交 May 21, 2018 ·发布 Jan. 19, 2020 ·更新 Jan. 9, 2020
4
样本数
4
实验数
1
相关文献
实验描述

A knockout cell library in Huh7.5.1 cells was generated by introducing a genome-scale CRISPR library (GeCKOv2, Addgene #1000000049) and subjected to hepatitis A virus infection (HM175/18f) to isolate virus-resistant mutant cells. Genomic DNA was isolated from the original and virus-selected mutant cell populations and abundance of guideRNA encoding sequences were measured by sequencing on an Illumina NextSeq (High Output).

参考文献
A CRISPR screen identifies UFMylation and TRAMP-like complexes required for hepatitis A virus infection
Jessie Kulsuptrakul, Ruofan Wang, Nathan L. Meyers, Melanie Ott, Andreas S. Puschnik
样本属性
cell line
Huh7.5.1
cell type
hepatocyte
genetic modification
Mutagenized with GeCKOv2 sublibrary A, Mutagenized with GeCKOv2 sublibrary B
genotype
unselected genome-wide knockout mutant library, virus-selected genome-wide knockout mutant library
infect
12 days post hepatitis A virus infection, uninfected
organism
Homo sapiens
实验信息
登记号
E-MTAB-8646
GEO 编号
ERP119273
实验类型
genotyping by high throughput sequencing
物种
Homo sapiens
提交日期
May 21, 2018
发布日期
Jan. 19, 2020
更新日期
Jan. 9, 2020
提交者
Andreas S Puschnik
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