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E-MTAB-2756 transcription profiling by array Mus musculus

Molecular mechanisms of cigarette smoke-induced lung emphysema

提交 2009年6月1日 ·发布 2014年11月28日 ·更新 2014年7月16日
249
样本数
249
实验数
1
芯片平台
1
相关文献
实验描述

Chronic obstructive pulmonary disease (COPD) is a complex pulmonary disorder primarily induced by cigarette smoking, and characterized by persistent airflow limitation. The mouse represents an important model for studying COPD pathologies such as lung emphysema. In this respect, a number of mechanistic studies have been performed, however the approaches were mostly focused on single gene analysis or characterization of cellular, inflammatory or histopathological changes without attempting a more comprehensive interpretation. In the present study we aimed at applying systems biology approach to identify genome-wide molecular mechanisms indicative of cigarette smoke (CS)-induced lung emphysema. The lung transcriptomes of five mouse models (C57BL/6, ApoE-/-, A/J, CD1, and Nrf2-/-), that are known to be susceptible to CS-induced emphysema development, were analyzed following prolonged (5-6 months) CS exposure. The investigation resulted in the confirmation of many existing mechanistic explanations underlying smoke-induced lung emphysema, including increased transcriptional activity of NF-?B, and increased levels of TNF-a, IFN-g, and IL-1b. More importantly, we predicted mechanisms without currently well-documented roles, including increased transcriptional activity of PU.1, STAT1, C/EBP, FOXM1, YY1 and N-cor, and increased IL-17 cytokine expression, and reduced protein expression of ITGB6 and CFTR. We also corroborated, by using targeted proteomic approaches, several predictions such as reduced expression of ITGB6 and increased expression of BRCA1, C/EBPs, PU.1, TNF-a, IL-1b or CSF2. We believe this study will provide more insights into better understanding of CS-induced molecular processes underlying emphysema development in mice that may eventually be relevant in humans.

参考文献
Molecular mechanisms of cigarette smoke-induced lung emphysema in susceptible mice genotypes
Maciej Cabanski; Brett Fields; Stephanie Boue; Natalia Boukharov; Hector De Leon; Natalie Dror; Marcel Geertz;c; Emmanuel Guedj; Anita Iskandar; Robin Kleiman; Ulrike Kogel; Celine Merg; Michael Peck; Carine Poussin; Walter K. Schlage; Marja Talikka; Nikolai V. Ivanov; Julia Hoeng; and Manuel C. Peitsch
芯片平台
A-AFFY-45
Affymetrix GeneChip Mouse Genome 430 2.0 [Mouse430_2](249 例)
样本属性
BioSourceType
fresh_sample
CigaretteBrand
None, 3R4F
CigaretteProductCategory
None, Conventional Cigarette
DailyExposureDuration
4 hour
ExposureType
whole body
ExternalSampleId
920002, 920005, 920007, 920009, 920014, 920017, 920022, 920024, 920028, 920031, 920034, 920038, 920039, 920041, 920046, 920048, 920049, 920050, 920058, 920062, 920064, 920072, 920073, 920077, 920081, 920087, 920089, 920090, 920092, 920093, 920094, 920096, 920099, 920103, 920108, 920109, 920111, 920112, 920115, 920116, 920117, 920119, 920125, 920130, 920131, 920132, 920134, 920135, 920145, 920149, 920150, 920159, 920160, 920161, 920165, 920175, 920179, 920181, 920189, 920203, 920205, 920211, 920213, 920214, 920218, 920221, 920222, 920223, 920226, 920228, 920232, 920233, 920234, 920238, 920239, 920249, 920250, 920253, 920255, 920257, 920258, 920259, 920261, 920263, 920265, 920266, 920270, 920273, 920277, 920287, 920291, 920292, 920298, 920305, 920307, 920311, 920314, 920316, 920317, 920325, 920327, 920332, 920339, 920340, 920345, 920352, 920356, 920362, 920372, 920374, 920379, 920387, 920395, 920402, 920403, 920405, 920409, 920411, 920415, 920417, 920418, 920427, 920429, 920431, 920433, 920438, 920443, 920444, 920446, 920447, 920448, 920452, 920457, 920459, 920460, 920463, 920467, 920468, 920470, 920471, 920472, 920474, 920481, 920486, 920491, 920497, 920498, 920515, 920516, 920519, 920520, 920521, 920522, 920526, 920528, 920530, 920533, 920536, 920540, 920545, 920546, 920548, 920549, 920550, 920552, 920555, 920559, 920560, 920565, 920567, 920569, 920570, 920572, 920573, 920576, 920579, 920590, 920593, 920595, 920605, 920610, 920615, 920628, 920630, 920637, 920644, 920655, 920657, 920660, 920663, 920664, 920665, 920666, 920668, 920670, 920679, 920681, 920690, 920691, 920692, 920693, 920695, 920696, 920698, 920700, 920701, 920702, 920705, 920710, 920711, 920717, 920721, 920726, 920730, 920733, 920735, 920736, 920737, 920739, 920746, 920752, 920753, 920762, 920763, 920766, 920769, 920771, 920772, 920773, 920774, 920775, 920776, 920781, 920790, 920811, 920815, 920817, 920821, 920822, 920823, 920827, 920831, 920834, 920838, 920839, 920841, 920843, 920845, 920850
Organ
Left Lung
Organism
Mus musculus
SamplingAfterExposure
2 hour, 24 hour
Sex
female
SmokeConcentration
None, 750 ug TPM/l
SmokingRegimen
None, Health Canada
StrainOrLine
C57BL/6
TestSubstance1
conditioned fresh air, diluted mainstream smoke
TestSubstance2
None, conditioned fresh air
Tissue
Parenchyma
TotalExposureDuration
1 month, 2 month, 3 month, 4 month, 5 month, 7 month
WeeklyExposureFrequency
5 Count
实验信息
登记号
E-MTAB-2756
实验类型
transcription profiling by array
物种
Mus musculus
提交日期
2009年6月1日
发布日期
2014年11月28日
更新日期
2014年7月16日
提交者
Carine Poussin、 Sam Ansari
分析服务
分析服务

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