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E-MTAB-10256 DNA-seq Nicotiana benthamiana, Nicotiana benthamiana

NGS data of Nicotiana benthamiana 16c plants after CRISPR/Cas9 gene editing

·发布 2022年5月4日
160
样本数
160
实验数
1
相关文献
实验描述

Provided data came from a detailed study on Nicotiana benthamiana 16c plants where we use Tobacco Rattle Virus (TRV) as a molecular switch to change the chromatin state of a reporter gene (P35S::GFP) from an actively transcribed to a transcriptionally silenced state. Our approach enables us to interrogate different chromatin states of the same locus with the same set of CRISPR/Cas9 genome editing reagents and systematically describe the effect of chromatin state on the frequency and type of mutations induced at various Cas9 targets in a huge set of independently edited cells.

参考文献
DNA methylation can alter CRISPR/Cas9 editing frequency and DNA repair outcome in a target-specific manner
Adela Pribylova, Lukas Fischer, Douglas E. Pyott, Andrew Bassett, Attila Molnar
样本属性
Organism
Nicotiana benthamiana
Cultivar
16c
Age
5
Developmental stage
adult
Genotype
wild type genotype
Organism part
leaf component
Growth condition
SANYO/Panasonic growth chambers with 16 h light 8 h dark photoperiods at 21 °C under 150 μmol·m−2·s−1 light
Optical density
0.15, 1.5
Epigenotype
TRV35S, noninfected, S1, TRV_WT, non_infected, TRV_35S, TRVWT
Infect
TRV, non-infected
Target site
control, dt, pb, db, ut, ub, mt, pt, mb, gfp
实验信息
登记号
E-MTAB-10256
实验类型
DNA-seq
物种
Nicotiana benthamiana, Nicotiana benthamiana
发布日期
2022年5月4日
提交者
Adéla Přibylová、 Attila Molnar
分析服务
分析服务

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