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E-GEOD-84974 SRP080199, GSE84974 ChIP-seq Mus musculus

CXCR5+ follicular cytotoxic T cells control viral infection in B cell follicles

·发布 2016年8月1日 ·更新 2016年8月6日
1
样本数
1
实验数
实验描述

In response to infection, antigen-specific CD8+ T cells are primed in the T cell zone of secondary lymphoid organs and differentiate into cytotoxic effector T (TC) cells. Concurrently, CD4+ T cells differentiate into follicular helper T (TFH) cells that localize to B cell follicles and promote protective antibody responses. During unresolved infections, however, some viruses including human immunodeficiency virus (HIV) or Epstein–Barr virus (EBV) escape immune control and persist in TFH cells and B cells, respectively. Exclusion of Tc cells from B cell follicles is thought to be a major mechanism of immune evasion. New strategies are therefore needed to eradicate infected cells in follicles for a permanent cure. Using mouse infection models and human samples, we here identify a specialized group of TC cells expressing the chemokine receptor CXCR5 that can selectively enter B cell follicles and eradicate infected TFH and B cells. We demonstrate that differentiation of these cells, which we term follicular cytotoxic T (TFC) cells, requires the transcription factors Bcl6, E2A and Tcf1, whereas the transcriptional regulators Blimp1, Id3 and Id2 inhibit their development. We demonstrate that Blimp1 and E2A directly regulate Cxcr5 expression, and together with Bcl6 and Tcf1 form a transcriptional circuit that guides the TFC differentiation. The identification of a follicular subset of TC cells has far reaching implications for developing better strategies for the control of infections that target B cells and TFH cells and for the eradication of B cell derived malignancies. There is no associated input. The E2A Bio-ChIP-seq was performed with total thymocytes from Tcf3Bio/Bio Rosa26BirA/BirA mice

样本属性
cell type
total thymocytes
chip antibody
Streptavidin (BioChIP using a Streptavidin pulldown; PMID:21552207)
genotype
Tcf3(Bio/Bio) Rosa26(BirA/BirA)
organism
Mus musculus
strain background
C57BL/6
实验信息
登记号
E-GEOD-84974
GEO 编号
SRP080199, GSE84974
实验类型
ChIP-seq
物种
Mus musculus
发布日期
2016年8月1日
更新日期
2016年8月6日
提交者
Ivan Bilic、 Markus Jaritz、 Martina Minnich
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