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E-GEOD-72069 GSE72069, SRP062410 ChIP-seq, RNA-seq of coding RNA Mus musculus

TGF-β Tumor Suppression Through A Lethal EMT

·发布 2016年2月24日 ·更新 2016年3月17日
22
样本数
22
实验数
1
相关文献
实验描述

TGF-β is a major tumor suppressor in gastrointestinal (GI) and squamous carcinomas, which exhibit frequent genetic inactivation of Smad4, a key TGF-β signaling component. Apoptosis is implicated as an important mediator of the tumor suppressive function of TGF-β, although this process remains poorly understood. To address this long-standing question, we dissected the tumor suppressive action of TGF-β in naïve pancreatic ductal adenocarcinoma (PDA) cells. Here we show that TGF-β/Smad4 signaling triggers an EMT in Kras-mutant pancreatic progenitor cells but turns this process into a trigger of apoptosis by converting the progenitor cell transcription factor Sox4 from an enforcer of epithelial progenitor identity into an activator of apoptosis. This occurs as a result of the EMT-linked repression of the endodermal master regulator Klf5, which cooperates with Sox4 to promote epithelial progenitor identity, and loss of which unmasks a latent apoptotic transcriptional program driven by Sox4. By losing Smad4, Kras-mutant PDA cells avoid this fate and instead use Sox4 as a TGF-β-dependent enforcer of the epithelial progenitor cell state. In this study, 16 RNA-Seq samples and 6 ChIP-Seq samples are included.

参考文献
样本属性
antibody
anti-Klf5, anti-Med1, anti-Smad2/3, anti-Sox4
catalog #
#8685, A300-793A, ab137676, C1531012A
cell line
KSIC_c806, KSIC_c806 + Smad4
genetic background
FVB
genotype
Pdx1-Cre;LSL-KrasG12D;Cdkn2a fl/fl;Smad4 fl/fl
lot#
Lot A300-793A-2, Lot A574-004, Lot gr107314-27, Lot#3
organism
Mus musculus
vendor
Abcam, Bethyl, Cell Signaling, Diagenode
实验信息
登记号
E-GEOD-72069
GEO 编号
GSE72069, SRP062410
实验类型
ChIP-seq, RNA-seq of coding RNA
物种
Mus musculus
发布日期
2016年2月24日
更新日期
2016年3月17日
提交者
Yun-Han Huang、 Charles David、 Yilong Zou、 Joan Massagué、 Yilong Zou
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