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E-GEOD-53214 GSE53214, SRP033701 RNA-seq of coding RNA Mus musculus

Distinct Cellular Origins for Serotonin-Expressing and Enterochromaffin-like Cells in the Gastric Corpus

·发布 2013年12月12日 ·更新 2014年4月15日
2
样本数
2
实验数
1
相关文献
实验描述

The alimentary tract contains a diffuse endocrine system comprising enteroendocrine cells that secrete peptides or biogenic amines to regulate digestion, insulin secretion, food intake, and energy homeostasis. Lineage analysis in the stomach revealed that a significant fraction of endocrine cells in the gastric corpus did not arise from neurogenin3-expressing cells, unlike enteroendocrine cells elsewhere in the digestive tract. We aimed to isolate enriched serotonin-secreting and enterochromaffin-like (ECL) cells from the stomach and to clarify their cellular origin. We used Neurod1 and Neurog3 lineage analysis, and examined differentiation of serotonin-producing and ECL cells in stomach tissues of Neurod1-cre;ROSAtdTom, Tph1-CFP, c-Kitwsh/wsh, and Neurog3Cre;ROSAtdTom mice, by immunohistochemistry. We used fluorescence-activated cell sorting to isolate each cell type for gene expression analysis. We performed RNA-seq analysis of ECL cells. Neither serotonin-secreting nor ECL cells of the corpus arose from cells expressing Neurod1. Serotonin-secreting cells expressed a number of mast cell genes, but not genes associated with endocrine differentiation; they did not develop in c-Kitwsh/wsh mice and were labeled with transplanted bone marrow cells. RNA-seq analysis of ECL cells revealed high expression levels of many genes common to endocrine cells including transcription factors, hormones, ion channels, and solute transporters but not markers of bone marrow cells. We used fluorescence-activated cell sorting to isolate Hdc+ cells from stomach corpus and performed RNA-seq for gene expression analysis to determine the origin of those cells.

参考文献
样本属性
cell type
Hdc-CFP depleted stomach corpus epithelial cells., sorted stomach Hdc-CFP+ cells
genotype
Hdc-CFP transgenic
organism
Mus musculus
strain
C57BL/6
实验信息
登记号
E-GEOD-53214
GEO 编号
GSE53214, SRP033701
实验类型
RNA-seq of coding RNA
物种
Mus musculus
发布日期
2013年12月12日
更新日期
2014年4月15日
提交者
Daniel R Caffrey、 Daniel R Caffrey、 Hui J Li、 Andrew A Leiter、 Daniel Aiello
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