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E-GEOD-37588 GSE37588 transcription profiling by array Homo sapiens

New insights into key genes and pathways involved in the pathogenesis of HLA-B27-associated acute anterior uveitis

·发布 2012年5月31日 ·更新 2013年10月1日
6
样本数
6
实验数
1
芯片平台
实验描述

HLA-B27-associated inflammatory diseases remains one of the strongest HLA-disease known to date. HLA-B27-associated acute anterior uveitis has wide-ranging medical significance due to its ocular, systemic, immunologic, and genetic features. To investigate the genes and signalling pathways located upstream of the inflammatory processes in HLA-B27-associated acute anterior uveitis will help to know the mechanism of this disease. HLA-B27-positive and -negative monocytes isolated from human peripheral blood were stimulated with Vibrio cholera lipopolysaccharide (LPS). Gene expression microarrays were used to identify the differentially expressed genes, and they were analysed by a series of bioinformatics-based techniques. Gene expression microarray analysis revealed marked differences between B27-positive monocytes in the genes that are upregulated in response to LPS stimulation. Gene Ontology enrichment (GO) and pathway analysis indicated that genes participating in protein transport and folding were essential to the inflammatory process. The LPS receptor, TLR4, induced the Toll-like receptor signalling pathway and pathways related to Vibrio cholerae infection, which are located upstream of the network and contribute to the overall response. Among the DE genes, PIK3CA, PIK3CB, AKT3, and MAPK1 may play critical roles in inflammation.Equivalent LPS stimulation induces a different response in HLA-B27-positive monocytes compared to monocytes lacking this HLA protein, suggesting that the TLR pathway is involved in the pathogenesis of HLA-B27-associated AAU. Blocking this pathway and other pathways by siRNA interference of candidate genes may contribute to the development of a treatment for this type of AAU. HLA-B27-positive monocytes isolated from human peripheral blood were stimulated with Vibrio cholera lipopolysaccharide (LPS) for 12 hours.

芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](6 例)
样本属性
cell type
monocyte
organism
Homo sapiens
phenotype
HLA-B27 positive
实验信息
登记号
E-GEOD-37588
GEO 编号
GSE37588
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2012年5月31日
更新日期
2013年10月1日
提交者
Xiaofeng Hu、 Junmin Hu、 Jing Wang、 Xuhui Liu、 Xiaofeng Hu、 Hong Lu、 Xiaosheng Zhang、 Zhuozai Xu、 Xiaolong Zhang
分析服务
分析服务

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