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E-GEOD-36465 GSE36465 transcription profiling by array Pimephales promelas

A Short-Term Study Investigating the Estrogenic Potency of Diethylstilbesterol in the Fathead Minnow (Pimephales promelas): Exposure Phase

·发布 Sept. 20, 2012 ·更新 Oct. 1, 2012
12
样本数
12
实验数
1
芯片平台
1
相关文献
实验描述

Diethylstilbestrol (DES) is a synthetic estrogen that has been banned for use in humans, but still is employed in livestock and aquaculture operations in some parts of the world. Detectable concentrations of DES in effluent and surface waters have been reported to range from slightly below 1 to greater than 10 ng/L. Little is known, however, concerning the toxicological potency of DES in fish. In this study, sexually-mature fathead minnows (Pimephales promelas) of both sexes were exposed to 1, 10 or 100 ng DES/L water in a flow-through system. Tissue concentrations of DES and changes in a number of estrogen-responsive endpoints, including alterations to the hepatic transcriptome in females, were measured in the fish at the end of a 4-d exposure, and after a 4-d depuration/recovery period in clean water. The objectives of the study were to measure accumulation of DES in fish tissues, characterize effects of the chemical on physiological endpoints related to reproductive performance, and to evaluate DES's potency relative to concentrations reported in aquatic environments. The current series includes n=12 microarrays associated with exposure-phase samples (collected from fish exposed continuously for 4 d). Fish were exposed to 0, 1, 10, or 100 ng DES/L delivered in a continuous flow (45 ml/min) of sand filtered, UV treated, Lake Superior Water, without the use of carrier solvents. Flow of DES into the test system was initiated without fish present and continued for 1 d. Exposures then were started by placing three male and three female sexually-mature fathead minnows into each tank. There were eight replicate tanks for the control and 100 ng/L treatments, and six replicate tanks for the 1 and 10 ng/L groups. The fish were held at 25+1ºC under a 16:8 L:D photoperiod and were fed frozen adult brine shrimp twice daily (San Francisco Bay Brand, Newark, CA, USA). Fish used for the experiment were from an on-site culture, and all procedures involving animals conformed to guidelines approved by the local Animal Care and Use Committee. After the 4-d exposure, fish from three tanks from each treatment (n=9 per sex) were sampled for determination of various biological endpoints. At this time fish from two additional tanks from the control and 100 ng/L treatments also were sampled for determination of DES tissue residues (n=6 per sex). Delivery of DES to the test system was subsequently stopped, and fish from the remaining three tanks per treatment group were sampled 4 d later (n= 9 per sex). The fathead minnows were euthanized with buffered MS-222 (Argent, Redmond, VA, USA) and weighed. Fish were scored for occurrence and relative expression of nuptial tubercles, which in males can be reduced by ER agonists. Blood was collected from the caudal vein/artery with a microhematocrit tube, and plasma was separated by centrifugation and stored at -80ºC. Gonads were removed from males and a subsample (8.5±3.0 mg; mean±SD) was immediately immersed in tissue culture media for determination of ex vivo steroid production. Livers were removed from both sexes and flash-frozen for gene expression analyses using microarray (females) or real-time QPCR (males). Hepatic transcripts from three females per treatment group, in each phase of the experiment (except n=2 from recovery phase 10 ng/L) were analyzed using a custom 15,000 feature microarray (GEO Platform Accession GPL9248). Data sets for the exposure phase (n=12 microarrays) and recovery phase (n=11) were normalized independently using Fastlo (Ballman et al., 2004) implemented in R (

参考文献
Short-term study investigating the estrogenic potency of diethylstilbesterol in the fathead minnow (Pimephales promelas).
Adedeji OB, Durhan EJ, Garcia-Reyero N, Kahl MD, Jensen KM, Lalone CA, Makynen EA, Perkins EJ, Thomas L, Villeneuve DL, Ankley GT
PMID: 22708615
芯片平台
A-GEOD-10259
Agilent-019597 custom fathead minnow 60mer (8x15k)(12 例)
样本属性
12h
0.00270421367302081, 0.00274028670930015, 0.00586018065334846, 0.00959095833501751, 0.0112908595292945, 0.0117518977557666, 0.0183048428327178, 0.0204416997172479, 0.0219833059575163, 0.0219889253216215, 0.0266469191567719, 0.0439174387561716, 0.0655438132336652, 0.0672690979993343, 0.132828847458642, 0.145343864838933, 0.145619221302546, 0.186325460963979, 0.24493621608922, 0.265306508566937, 0.279785178586985, 0.382033726126491, 0.571282754852074
ctid
160406, 160411, 160416, 160423, 160430, 160436, 160440, 160446, 160454, 160460, 160464, 160472
FISH wet wt g
0.66, 0.83, 0.85, 0.87, 0.92, 0.96, 1.01, 1.04, 1.1, 1.17, 1.22
gonad wt g
0.0243, 0.0288, 0.0344, 0.0352, 0.0362, 0.0387, 0.0633, 0.064, 0.0693, 0.0764, 0.0944, 0.1745
gsi
11.1058823529412, 14.3032786885246, 2.92771084337349, 3.1304347826087, 3.38461538461538, 3.77083333333333, 3.95402298850575, 4.03125, 5.47008547008547, 6.86138613861386, 6.94545454545455, 9.59090909090909
liver esr1 mrna
103.01, 109.74, 127.64, 128.2, 134.78, 137.58, 143.52, 152.67, 231.82, 255.15, 62.68, 77.53
liver vtg mrna
1.67E+06, 1.84E+06, 1.97E+05, 2.15E+06, 3.07E+06, 3.09E+06, 3.58E+02, 4.13E+06, 5.59E+06, 6.82E+06, 6.91E+06, 7.21E+05
ml
0.271934303492923, 0.319788613214742, 0.393871897839352, 0.43728944590842, 0.544477572709868, 0.562999482511539, 0.7331688344107, 1.037139656357, 1.5077140976803, 1.63400354972898, 3.21231477809663, 4.16302956973584
notes
Immature
Organism
Pimephales promelas
organism part
liver
plasma vtg
10.5, 11.3, 13, 2.01, 2.5, 22.1, 28, 29.1, 4.28, 47.7, 49.3, 60.4
Sex
F
tank
1, 2, 3
time sampled
10:02, 10:27, 10:48, 11:21, 11:35, 11:53, 1:23, 1:38, 2:02, 2:29, 9:05, 9:21
实验信息
登记号
E-GEOD-36465
GEO 编号
GSE36465
实验类型
transcription profiling by array
物种
Pimephales promelas
发布日期
Sept. 20, 2012
更新日期
Oct. 1, 2012
提交者
Dan Villeneuve、 Carlie A LaLone、 Gerald T Ankley、 Olufemi B Adedeji、 Linnea Thomas、 Elizabeth J Durhan、 Daniel L Villeneuve、 Natalia Garcia-Reyero、 Kathleen M Jensen、 Michael D Kahl、 Edward J Perkins、 Elizabeth A Makynen
分析服务
分析服务

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