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E-GEOD-32967 GSE32967 transcription profiling by array Homo sapiens

Modeling lethal prostate cancer variant with small cell carcinoma features [expression profile]

·发布 2012年1月1日 ·更新 2012年1月11日
22
样本数
22
实验数
1
芯片平台
实验描述

Purpose: Small-cell prostate carcinoma (SCPC) morphology predicts for a distinct clinical behavior, resistance to androgen ablation, and frequent but short responses to chemotherapy. The model systems we report reflect the biology of the human disease and can be used to improve our understanding of SCPC and to develop new therapeutic strategies for it. Experimental Design: We developed a set of CRPC xenografts and examined their fidelity to their human tumors of origin. We compared the expression and genomic profiles of SCPC and large cell neuroendocrine carcinoma (LCNEC) xenografts to those of typical prostate adenocarcinoma xenografts and used a panel of 60 human tumors to validate our findings using immunohistochemistry. Results: We show that SCPC and LCNEC xenograft models retain high fidelity to their human tumors of origin and are characterized by a marked upregulation of UBE2C and other M-phase cell cycle genes in the absence of AR, retinoblastoma (RB1) and cyclin D1 (CCND1) expression and confirm these findings in a panel of CRPC patients’ samples. In addition, array comparative genomic hybridization of the xenografts showed that the SCPC/LCNEC tumors display more copy number variations than the adenocarcinoma counterparts and that there is amplification of the UBE2C locus and microdeletions of RB1 in a subset of these, but no AR nor CCND1 deletions. Moreover, the AR, RB1, and CCND1 promoters showed no CpG methylation in the SCPC xenografts. Conclusion: Modeling human prostate cancer with xenografts allows in-depth and detailed studies of its underlying biology. The detailed clinical annotation of the donor tumors enables associations of anticipated relevance to be made. Futures studies in the xenografts will address the functional significance of the findings. 22 samples were analysed, that included MDA PCa 79 (n = 3), 117-9 (n = 3), 130 (n = 2), 144-4 (n = 4), 144-13 (n = 5), 146-10 (n = 3), 155-2 (n = 1), and 155-12 (n = 1). MDA PCA 79, 117-9 and 130 samples had the pathologic characteristics of prostate adenocarcinoma and were compared against MDA PCA 144-4, 144-13, 146-10 and 155-12 that have the pathologic features of prostate small cell/ large cell neuroendocrine carcinoma

芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](22 例)
样本属性
histologic type
adenocarcinoma, large cell neuroendocrine carcinoma, small cell carcinoma
Organism
Homo sapiens
tissue
prostate cancer
tumor stage
castration-resistant prostate cancer (CRPC)
实验信息
登记号
E-GEOD-32967
GEO 编号
GSE32967
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2012年1月1日
更新日期
2012年1月11日
提交者
Ana Aparicio、 Lu Jing-Fang、 Sankar Maity、 Vassiliki Tzelepi、 Nora M Navone、 Jiexin Zhang、 Shoudan Liang、 Brittany Kleb
分析服务
分析服务

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