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E-GEOD-19722 GSE19722 transcription profiling by array Homo sapiens

Airway Basal Cells of Healthy Smokers Express an Embryonic Stem Cell Signature Relevant to Lung Cancer

·发布 2014年9月9日 ·更新 2014年9月15日
64
样本数
64
实验数
1
芯片平台
1
相关文献
实验描述

Activation of the human embryonic stem cell (hESC)-signature genes has been observed in various epithelial cancers. In this study, we found that the hESC signature is selectively induced in the airway basal stem/progenitor cell population of healthy smokers (BC-S), with a pat-tern similar to that activated in all major types of human lung cancer. We further identified a subset of 6 BC-S hESC genes, whose coherent overexpression in lung AdCa was associated with reduced lung function, poorer differentiation grade, more advanced tumor stage, remarkably shorter survival and higher frequency of TP53 mutations. BC-S shared with hESC and a consid-erable subset of lung carcinomas a common TP53 inactivation molecular pattern which strongly correlated with the BC-S hESC gene expression. These data provide transcriptome-based evi-dence that smoking-induced reprogramming of airway BC towards the hESC-like phenotype might represent a common early molecular event in the development of aggressive lung carci-nomas in humans. Affymetrix arrays were used to assess gene expression data of genes realted to human embryonic stem cells in large airway epithelium obtained by fiberoptic bronchoscopy of 21 healthy non-smokers and 31 healthy smokers, basal cell culture of large airway epithelium obtained by fiberoptic bronchoscopy of 4 healthy nonsmokers and 4 healthy smokers and cells obtained from tumor tissues of 4 individuals.

参考文献
Airway basal cells of healthy smokers express an embryonic stem cell signature relevant to lung cancer.
Shaykhiev R, Wang R, Zwick RK, Hackett NR, Leung R, Moore MA, Sima CS, Chao IW, Downey RJ, Strulovici-Barel Y, Salit J, Crystal RG
PMID: 23857717
芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](64 例)
样本属性
Age
None, 22, 27, 29, 31, 32, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 54, 56, 59
age
None, 23, 32, 33, 41, 42, 47, 49, 53, unknown
Ethnic group
None, Asian, Black, black/hispanic, Hispanic, hispnaic, White
ethnic group
None, Asian, Black, White
organism
Homo sapiens
Sex
None, female, male
sex
None, female, male
Smoking Status
None, non-smoker, smoker, 20 pack-years, smoker, 21 pack-years, smoker, 25 pack-years
Smoking status
None, non-smoker, smoker, 1 pack-years, smoker, 11 pack-years, smoker, 12 pack-years, smoker, 13 pack-years, smoker, 19 pack-years, smoker, 20 pack-years, smoker, 22 pack-years, smoker, 23 pack-years, smoker, 24 pack-years, smoker, 26 pack-years, smoker, 29 pack-years, smoker, 3 pack-years, smoker, 3.8 pack-years, smoker, 30 pack-years, smoker, 32 pack-years, smoker, 33 pack-years, smoker, 36 pack-years, smoker, 43 pack-years, smoker, 45 pack-years, smoker, 47 pack-years, smoker, 5 pack-years, smoker, 60 pack-years, smoker, 7.6 pack-years, smoker, 70 pack-years, smoker, 80 pack-years
smoking status
None, non-smoker, smoker, 19 pack-years, smoker, 20 pack-years, smoker, 35 pack-years, smoker, 9 pack-years, unknown
实验信息
登记号
E-GEOD-19722
GEO 编号
GSE19722
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2014年9月9日
更新日期
2014年9月15日
提交者
Neil R Hackett、 Renat Shaykhiev、 IonWa Chao、 Ronald G Crystal、 Rachel K Zwick、 Rui Wang、 Robert J Downey、 Yael G Strulovici-Barel、 Malcolm A Moore、 Ronald Leung、 Camelia S Sima、 Yael Strulovici-Barel、 Jacqueline Salit
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