主页 实验库实验详情
E-GEOD-13866 GSE13866 transcription profiling by array Daphnia magna

Nickel and binary metal mixtures in Daphnia magna after 96h

提交 2008年12月8日 ·发布 2010年5月22日 ·更新 2014年5月4日
42
样本数
21
实验数
1
芯片平台
1
相关文献
实验描述

The recent development of a custom cDNA microarray platform for one of thé standard organisms in aquatic toxicology, Daphnia magna, opened up new ways to mechanistic insights of toxicological responses. In this study, gene expression and (sub)organismal responses (Cellular Energy Allocation, growth) were assayed after short-term waterborne metal exposure. Microarray analysis of Ni-exposed daphnids revealed several affected functional gene classes, of which the largest ones were involved in different metabolic processes (mainly protein and chitin related processes), cuticula turnover, transport and signal transduction. Furthermore, genes involved in oxygen transport and heme metabolism (hemoglobin, δ-aminolevilunate synthase) were down-regulated. Applying a Partial Least Squares regression on nickel fingerprints and biochemical (sub)organismal parameters revealed a set of co-varying genes (hemoglobin, RNA terminal phosphate cyclase, a ribosomal protein and an “unknown” gene fragment). An inverse relationship was seen between the mRNA expression levels of different cuticula proteins and available energy reserves. In addition to the nickel exposure, daphnids were exposed to binary mixtures of nickel and cadmium or nickel and lead. Using multivariate analysis techniques, the mixture gene expression fingerprints (Ni2++Cd2+, Ni2++Pb2+) were compared to those of the single metal treatments (Ni2+, Cd2+, Pb2+). It was hypothesized that the molecular fingerprints of the mixtures would be additive combinations of the gene expression profiles of the individual compounds present in the mixture. However, our results clearly showed additionally affected pathways after mixture treatment (e.g. additional affected genes involved in carbohydrate catabolic processes and proteolysis), indicating interactive molecular responses which are not merely the additive sum of the individual metals. These findings, although indicative of the complex nature of mixture toxicity evaluation, underline the potential of a toxicogenomics approach in gaining more mechanistic information on the effects of single compounds and mixtures. In general, a universal reference design was used. The following analysis (normalization and statistical analysis) was performed. Spots were identified and ratio’s quantified by means of the Genepix software 5.0 (Axon Instruments). Subsequently, a MIAME compliant platform, the BioArray Software Environment Database (BASE 1.2.12,

芯片平台
A-GEOD-7742
EBT_UA_Daphnia magna_2.3K_version1(21 例)
样本属性
Age
96h old, 96h old;
Exposure
0.125mg/L nickel chloride, 0.5mg/L nickel & 0.05mg/L cadmium, 0.5mg/L nickel & 0.5mg/L lead, 0.5mg/L nickel chloride, 1mg/L nickel chloride, 2mg/L nickel chloride, none
Organism
Daphnia magna
Tissue
whole body extracts (45 organisms), whole body extracts (45 organisms);
实验信息
登记号
E-GEOD-13866
GEO 编号
GSE13866
实验类型
transcription profiling by array
物种
Daphnia magna
提交日期
2008年12月8日
发布日期
2010年5月22日
更新日期
2014年5月4日
提交者
Tine Vandenbrouck、 Wim De Coen、 Anneleen Soetaert
分析服务
分析服务

联系地址

山东省济南市章丘区文博路2号

齐鲁师范学院 genelibs生信实验室

山东省济南市高新区舜华路750号

大学科技园北区F座4单元2楼

电话: 0531-88819269

微信公众号

关注微信订阅号,实时查看信息,关注医学生物学动态。


商务邮箱

E-mail: product@genelibs.com