ABCA4 (ATP binding cassette subfamily A member 4)

symbol:
ABCA4
locus group:
protein-coding gene
location:
1p22.1
gene_family:
ATP-binding cassette, sub-family A (ABC1)
alias symbol:
FFM|ARMD2|CORD3
alias name:
Stargardt disease
entrez id:
24
ensembl gene id:
ENSG00000198691
ucsc gene id:
uc001dqh.4
refseq accession:
NM_000350
hgnc_id:
HGNC:34
approved reserved:
1994-07-14
1p22.1
基因染色体位置图

ABCA4(ATP-binding cassette subfamily A member 4)属于ABC转运蛋白超家族中的A亚家族,主要表达于视网膜感光细胞的盘膜边缘,负责转运视黄醛衍生物。其生物学功能是将光激活后产生的全反式视黄醛从感光细胞外段转运至细胞质,参与视觉循环。该基因突变会导致脂褐质等代谢产物异常堆积,引发常染色体隐性遗传病——Stargardt病(青少年黄斑变性),表现为进行性中央视力丧失。此外,ABCA4突变还与年龄相关性黄斑变性(AMD)和视网膜色素变性有关。过表达ABCA4可能增强视黄醛清除效率,但具体机制尚不明确;表达降低则导致毒性代谢物积累,加速感光细胞凋亡。ABCA基因家族共有12个成员(ABCA1-ABCA12),均含有两个核苷酸结合结构域(NBD)和两个跨膜结构域(TMD),通过ATP水解供能完成跨膜转运。家族共性包括:参与胆固醇/脂类转运(如ABCA1调控高密度脂蛋白生成)、维持组织屏障功能(如ABCA12影响皮肤脂质分泌)。ABCA4特有的Gly863Ala、Ala1038Val等高频致病突变可造成蛋白质错误折叠或转运功能丧失,目前基因治疗策略正针对这些突变开展临床试验。

The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intracellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the ABC1 subfamily. Members of the ABC1 subfamily comprise the only major ABC subfamily found exclusively in multicellular eukaryotes. This protein is a retina-specific ABC transporter with N-retinylidene-PE as a substrate. It is expressed exclusively in retina photoreceptor cells, indicating the gene product mediates transport of an essental molecule across the photoreceptor cell membrane. Mutations in this gene are found in patients diagnosed with Stargardt disease, a form of juvenile-onset macular degeneration. Mutations in this gene are also associated with retinitis pigmentosa-19, cone-rod dystrophy type 3, early-onset severe retinal dystrophy, fundus flavimaculatus, and macular degeneration age-related 2. [provided by RefSeq, Jul 2008]

由该基因编码的膜相关蛋白是ATP结合盒(ABC)转运蛋白的超家族中的一员。 ABC蛋白质跨越细胞内外膜运输各种分子。 ABC基因被分为七个不同亚科(ABC1,MDR / TAP,MRP,ALD,OABP,GCN20,白色)。这种蛋白质是ABC1亚科的成员。该ABC1亚科的成员包括只在多真核生物中发现的唯一的主要ABC亚科。这种蛋白质是一个特定视网膜-ABC转运与N-亚视黄基的PE作为基材。它是在视网膜感光细胞只表达,这表明该基因产物介导穿过感光细胞膜一个essental分子的运输。在这个基因的突变在诊断患有Stargardt病,幼年型黄斑变性的一种形式的患者中发现。在这个基因的突变也与色素性视网膜炎-19,锥 - 视杆营养不良型3相关联,早发性严重视网膜营养不良,眼底flavimaculatus,和黄斑变性年龄相关2. [通过的RefSeq,2008年7月提供]

ABCA4基因的碱基序列:[NCBI]
Loading Gene Browser...
ABCA4基因的碱基突变:           仅显示部分snp
rs472908       rs479110       rs481290       rs481931       rs483904       rs484110       rs486879       rs487906       rs492220       rs497511       rs513267       rs515263       rs521538       rs524302       rs524322       rs525749       rs526016      

ABCA4基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
CCCGAGGAGTATGGAATCAC
60
AGTGGTCAGCACTGTAATCTC
60
CATTCAAGATGCTCACTGGG
59
ATACTCTTGCCTGCTACGG
59
TTTGCCAGTTTCATGATCATCC
60
TCACAGTCATGGAGACAGAG
59
TGGGACATCATGAATTATTCCG
59
AGAAGTGTAGGCTTTCTTCTG
58
ATGATGTGGCTGAAGAAAGAC
59
GTGCCTGGATAAATCTTGGT
58
CCCGAGGAGTATGGAATCAC
59
AGTGGTCAGCACTGTAATCTC
59
ATTCAAGATGCTCACTGGG
58
CAAACTGAGGACAGTAGCC
58
CAATGAACAGAGGTATGGAGGA
60
AAACCCAACAAGTGCTTCC
59
GAGCTACACATCTTGTCCCA
60
CCTTATTCGTATTCCTCTTCCTG
59
ATTCAAGATGCTCACTGGG
57
AATACTCTTGCCTGCTACG
57
      尚未收录相关数据

ABCA4基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

ABCA4基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0005524
F6TT59 (UniProtKB)
IEA
GO:0005887
F6TT59 (UniProtKB)
IEA
GO:0007601
F6TT59 (UniProtKB)
IEA
GO:0042626
F6TT59 (UniProtKB)
IEA
GO:0055085
F6TT59 (UniProtKB)
IEA
GO:0001523
P78363 (UniProtKB)
TAS
GO:0004012
P78363 (UniProtKB)
IEA
GO:0005215
P78363 (UniProtKB)
TAS
GO:0005395
P78363 (UniProtKB)
TAS
GO:0005524
P78363 (UniProtKB)
IEA
GO:0005887
P78363 (UniProtKB)
IEA
GO:0006649
P78363 (UniProtKB)
IEA
GO:0006810
P78363 (UniProtKB)
TAS
GO:0006869
P78363 (UniProtKB)
IBA
GO:0007601
P78363 (UniProtKB)
IEA
GO:0007603
P78363 (UniProtKB)
TAS
GO:0016020
P78363 (UniProtKB)
TAS
GO:0042626
P78363 (UniProtKB)
TAS
GO:0043231
P78363 (UniProtKB)
IBA
GO:0045332
P78363 (UniProtKB)
IEA
GO:0045494
P78363 (UniProtKB)
IEA
GO:0055085
P78363 (UniProtKB)
TAS
GO:0097381
P78363 (UniProtKB)
TAS

可能调控 ABCA4基因的相关microRNA:     

Reactome

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
STARGARDT DISEASE 1 (disorder) 0.442442977 21 65 BeFree_CLINVAR_CTD_human_MGD_UNIPROT
CONE-ROD DYSTROPHY 3 (disorder) 0.44 7 17 CLINVAR_CTD_human_MGD_UNIPROT
Retinitis Pigmentosa 0.389965683 42 0 BeFree_CLINVAR_CTD_human_GAD_LHGDN_ORPHANET
Macular Degeneration, Age-Related, 2 0.36 4 9 CLINVAR_CTD_human_UNIPROT
RETINITIS PIGMENTOSA 19 0.32 0 2 CLINVAR_CTD_human_MGD
Stargardt's disease 0.247101096 3 3 CLINVAR_GAD_ORPHANET
Age related macular degeneration 0.168834588 78 4 BeFree_CTD_human_GAD_LHGDN
Cleft Lip 0.122638474 1 0 BeFree_CTD_human_GAD
Colorectal Neoplasms 0.12 1 0 CTD_human
Retinal Dystrophy, Early Onset Severe 0.12 0 2 CLINVAR

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